C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142060 Gbp3-005 ENSMUSG00000028268 10090 + 3:142561234-142565054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000142060
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000142060 15.169±4.32 7.018±1.45 11.745±4.42 2.494±0.63 2.331±0.31 10.049±1.44 2.265±1.11 7.126±1.29 8.124±2.31 0.358±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_000D CGP 3:142496934-142619179
CIL_000033 CIL_000033_000C CGP 3:142530338-142573209
CIL_000033 CIL_000033_0009 CGP 3:142560052-142638008

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005525 IEA GTP binding
GO:0005829 IDA cytosol
GO:0006184 IEA GTP catabolic process
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035458 IDA cellular response to interferon-beta
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000097448 si:ch211-209n20.1-201 protein_coding Danio_rerio 1e-39 167
ENSDART00000097447 si:ch211-209n20.1-202 protein_coding Danio_rerio 1e-39 167
ENSDART00000141250 si:ch211-209n20.1-001 protein_coding Danio_rerio 1e-39 167
ENST00000370456 GBP6-001 protein_coding Homo_sapiens 0 399

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