C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: guanylate binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028268 Gbp3 10090 + 3:142560052-142573209 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029935 Gbp3-001 142560145-142573209 protein_coding
  ENSMUST00000106221 Gbp3-003 142560411-142573207 protein_coding
  ENSMUST00000106222 Gbp3-002 142560052-142573202 protein_coding
  ENSMUST00000128609 Gbp3-004 142560143-142564183 protein_coding
  ENSMUST00000142060 Gbp3-005 142561234-142565054 protein_coding
  ENSMUST00000142731 Gbp3-006 142560175-142565508 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029935ENSMUST00000106221ENSMUST00000106222ENSMUST00000128609ENSMUST00000142060ENSMUST00000142731
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029935 N/A 1.354±0.28 N/A N/A N/A N/A N/A N/A N/A N/A 0.329±0.00 N/A 2.749±0.00 N/A
ENSMUST00000106221 4.101±0.80 2.066±1.05 7.731±0.91 0.108±0.07 3.101±1.14 0.899±0.16 0.882±0.08 3.187±2.69 0.624±0.31 2.393±0.46 0.751±0.38 2.381±1.18 0.744±0.43 0.296±0.22
ENSMUST00000106222 3.180±0.82 3.035±0.03 6.448±1.31 0.038±0.00 1.912±0.74 0.557±0.06 0.635±0.42 1.942±0.26 0.858±0.51 2.201±0.46 0.353±0.12 1.649±0.57 0.794±0.30 0.139±0.03
ENSMUST00000128609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00
ENSMUST00000142060 15.169±4.32 7.018±1.45 N/A N/A 11.745±4.42 2.494±0.63 2.331±0.31 10.049±1.44 2.265±1.11 7.126±1.29 N/A 8.124±2.31 N/A 0.358±0.03
ENSMUST00000142731 3.732±0.00 1.409±0.28 N/A N/A 2.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_000D CGP 3:142496934-142619179
CIL_000033 CIL_000033_000C CGP 3:142530338-142573209
CIL_000033 CIL_000033_0009 CGP 3:142560052-142638008

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0006184 IEA GTP catabolic process
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035458 IDA cellular response to interferon-beta
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005627 CABZ01068209.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000034063 CABZ01068208.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000038668 gbp1 guanylate binding protein 1 protein_coding Danio_rerio
ENSDARG00000038669 gbp2 guanylate binding protein 2 protein_coding Danio_rerio
ENSDARG00000067663 si:ch211-209n20.1 si:ch211-209n20.1 protein_coding Danio_rerio
ENSDARG00000068857 gbp4 guanylate binding protein 4 protein_coding Danio_rerio
ENSDARG00000074988 si:ch211-209n20.1 si:ch211-209n20.1 protein_coding Danio_rerio
ENSG00000162654 GBP4 guanylate binding protein 4 protein_coding Homo_sapiens
ENSG00000213512 GBP7 guanylate binding protein 7 protein_coding Homo_sapiens

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