C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dihydrouridine synthase 1-like (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143139 Dus1l-006 ENSMUSG00000025155 10090 - 11:120792774-120796377 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungTestisENSMUST00000143139
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Testis
ENSMUST00000143139 7.200±0.00 29.279±6.48 7.053±0.00 6.153±1.15 4.251±0.00 8.133±1.62 14.956±3.94 5.829±1.36 17.620±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VJ CIL_0004VJ_0002 CGP 11:120784272-120796403
CIL_0004VI CIL_0004VI_0002 CGP 11:120789201-120824178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002943 IEA tRNA dihydrouridine synthesis
GO:0005575 ND cellular_component
GO:0017150 IEA tRNA dihydrouridine synthase activity
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306796 DUS1L-001 protein_coding Homo_sapiens 0 440
ENST00000354321 DUS1L-002 protein_coding Homo_sapiens 0 440
ENST00000538833 DUS1L-005 protein_coding Homo_sapiens 0 246
ENST00000577907 DUS1L-008 protein_coding Homo_sapiens 0 520
ENST00000578176 DUS1L-007 protein_coding Homo_sapiens 0 246
ENST00000578264 DUS1L-010 retained_intron Homo_sapiens 0 440
ENST00000578846 DUS1L-004 retained_intron Homo_sapiens 0 246
ENST00000578907 DUS1L-009 protein_coding Homo_sapiens 0 440
ENST00000582529 DUS1L-006 protein_coding Homo_sapiens 0 440

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