C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: transmembrane channel-like gene family 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143406 Tmc6-006 ENSMUSG00000025572 10090 - 11:117775717-117779650 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198
CIL_0000A9 CIL_0000A9_0002 CGP 11:117765988-117793110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306591 TMC6-026 protein_coding Homo_sapiens 0 483
ENST00000322914 TMC6-002 protein_coding Homo_sapiens 0 483
ENST00000392467 TMC6-001 protein_coding Homo_sapiens 0 483
ENST00000586126 TMC6-011 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000586697 TMC6-017 retained_intron Homo_sapiens 0.0000000000006 79
ENST00000588087 TMC6-006 retained_intron Homo_sapiens 0 483
ENST00000588792 TMC6-005 retained_intron Homo_sapiens 1e-25 121
ENST00000589271 TMC6-015 protein_coding Homo_sapiens 0 483
ENST00000589553 TMC6-003 protein_coding Homo_sapiens 0 278
ENST00000590162 TMC6-013 retained_intron Homo_sapiens 9e-26 121
ENST00000590602 TMC6-007 protein_coding Homo_sapiens 0 483
ENST00000591594 TMC6-020 retained_intron Homo_sapiens 0 307
ENST00000592063 TMC6-016 protein_coding Homo_sapiens 0 291
ENST00000592594 TMC6-010 protein_coding Homo_sapiens 0 263
ENST00000593044 TMC6-004 retained_intron Homo_sapiens 5e-25 121

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