C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane channel-like gene family 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025572 Tmc6 10090 - 11:117765988-117782198 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026659 Tmc6-001 117765988-117780639 protein_coding
  ENSMUST00000103025 Tmc6-002 117775357-117780621 protein_coding
  ENSMUST00000127227 Tmc6-007 117779192-117780658 protein_coding
  ENSMUST00000131606 Tmc6-003 117765988-117779648 nonsense_mediated_decay
  ENSMUST00000136729 Tmc6-005 117778742-117780944 protein_coding
  ENSMUST00000143406 Tmc6-006 117775717-117779650 protein_coding
  ENSMUST00000148220 Tmc6-009 117766060-117769073 retained_intron
  ENSMUST00000149589 Tmc6-008 117770078-117773043 nonsense_mediated_decay
  ENSMUST00000152304 Tmc6-004 117778938-117782198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026659ENSMUST00000148220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026659 15.693±5.11 18.279±5.81 21.899±2.59 1.025±0.04 20.376±9.44 46.375±2.36 3.716±1.27 13.044±2.01 14.523±13.15 26.545±3.05 0.875±0.41 15.658±4.97 5.136±1.27 2.466±1.15
ENSMUST00000148220 N/A N/A N/A 2.897±0.00 N/A N/A N/A N/A N/A N/A 1.571±0.00 20.216±0.00 13.654±0.00 1.615±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198
CIL_0000A9 CIL_0000A9_0002 CGP 11:117765988-117793110

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006811 IEA ion transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031965 IEA nuclear membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004875 TMC6 (1 of 2) transmembrane channel-like 6 protein_coding Danio_rerio
ENSDARG00000069787 tmc6a transmembrane channel-like 6a protein_coding Danio_rerio
ENSG00000141524 TMC6 transmembrane channel-like 6 protein_coding Homo_sapiens

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