C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sialophorin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143713 Spn-002 ENSMUSG00000051457 10090 - 7:127132232-127137814 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000143713
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000143713 0.396±0.00 0.876±0.20 6.417±5.82 0.546±0.09 0.246±0.12 0.681±0.20 0.204±0.09 1.568±0.26 0.729±0.36 0.046±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001562 IDA response to protozoan
GO:0001808 IMP negative regulation of type IV hypersensitivity
GO:0001931 IDA uropod
GO:0001934 IGI positive regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0005604 IDA basement membrane
GO:0005887 IDA integral component of plasma membrane
GO:0007162 IMP negative regulation of cell adhesion
GO:0007166 IDA cell surface receptor signaling pathway
GO:0009897 IDA external side of plasma membrane
GO:0031295 IDA T cell costimulation
GO:0042102 IDA positive regulation of T cell proliferation
GO:0042130 IMP negative regulation of T cell proliferation
GO:0042535 IMP positive regulation of tumor necrosis factor biosynthetic process
GO:0042742 IMP defense response to bacterium
GO:0045060 IMP negative thymic T cell selection
GO:0050688 IMP regulation of defense response to virus
GO:0050776 IMP regulation of immune response
GO:0050868 IMP negative regulation of T cell activation
GO:0097190 IDA apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372146 GTF3C4-001 protein_coding Homo_sapiens 0.00000008 66
ENST00000464363 NELFCD-006 retained_intron Homo_sapiens 0.00000002 64

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