C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIIC, polypeptide 4, 90kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372146 GTF3C4-001 ENSG00000125484 9606 + 9:132670035-132694955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372146 1.915±0.00 1.962±0.00 1.154±0.00 2.590±0.36 1.964±0.05 1.781±0.10 1.806±0.77 1.951±0.44 1.558±0.76 1.494±0.87 1.265±0.78 2.707±0.91 2.502±0.25 5.277±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OT CIL_0007OT_0001 UCNEbase 9:132620132-132870600

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000127 IDA transcription factor TFIIIC complex
GO:0003677 IC DNA binding
GO:0004402 IEA histone acetyltransferase activity
GO:0005515 IPI:IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IC transcription, DNA-templated
GO:0006383 IC transcription from RNA polymerase III promoter
GO:0006384 TAS transcription initiation from RNA polymerase III promoter
GO:0008047 TAS enzyme activator activity
GO:0010467 TAS gene expression
GO:0016573 IEA histone acetylation
GO:0042791 IC 5S class rRNA transcription from RNA polymerase III type 1 promoter
GO:0042797 IC tRNA transcription from RNA polymerase III promoter
GO:0043085 TAS positive regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037117 Gtf3c4-001 protein_coding Mus_musculus 0 2844
ENSMUST00000171404 Gtf3c4-201 protein_coding Mus_musculus 0 2519
ENSMUST00000124390 Gtf3c4-002 processed_transcript Mus_musculus 0 350
ENSMUST00000156468 Gtf3c4-003 processed_transcript Mus_musculus 0 329
ENSMUST00000030501 Ebna1bp2-001 protein_coding Mus_musculus 0.000000002 71
ENSMUST00000143713 Spn-002 nonsense_mediated_decay Mus_musculus 0.00000008 66

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