C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | vacuole membrane protein 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000143991  |
Vmp1-008 |
ENSMUSG00000018171 |
10090 | - |
11:86664654-86671179  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008VS | CIL_0008VS_0002 | VISTA | 11:86270110-86871719 |
| CIL_0008Y2 | CIL_0008Y2_0002 | VISTA | 11:86286196-86887829 |
| CIL_00081F | CIL_00081F_0002 | VISTA | 11:86323484-86925483 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000407 | IDA | pre-autophagosomal structure |
| GO:0003674 | ND | molecular_function |
| GO:0007566 | IDA | embryo implantation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000262291
|
VMP1-001 | protein_coding | Homo_sapiens | 0 | 315 |
|
ENST00000536180
|
VMP1-201 | protein_coding | Homo_sapiens | 0 | 315 |
|
ENST00000585847
|
VMP1-009 | nonsense_mediated_decay | Homo_sapiens | 0 | 315 |
|
ENST00000586245
|
VMP1-011 | nonsense_mediated_decay | Homo_sapiens | 4e-29 | 132 |
|
ENST00000587259
|
VMP1-007 | protein_coding | Homo_sapiens | 0 | 316 |
|
ENST00000588131
|
VMP1-005 | retained_intron | Homo_sapiens | 0 | 315 |
|
ENST00000589823
|
VMP1-017 | protein_coding | Homo_sapiens | 0 | 315 |
|
ENST00000591315
|
VMP1-003 | protein_coding | Homo_sapiens | 0 | 313 |
|
ENST00000592106
|
VMP1-006 | protein_coding | Homo_sapiens | 0 | 318 |
|
ENST00000593168
|
VMP1-010 | nonsense_mediated_decay | Homo_sapiens | 0 | 315 |
