C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuole membrane protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018171 Vmp1 10090 - 11:86583865-86683836 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018315 Vmp1-001 86583865-86683836 protein_coding
  ENSMUST00000123590 Vmp1-005 86584930-86602263 processed_transcript
  ENSMUST00000127267 Vmp1-006 86643233-86663573 processed_transcript
  ENSMUST00000139040 Vmp1-007 86664554-86683821 processed_transcript
  ENSMUST00000143991 Vmp1-008 86664654-86671179 protein_coding
  ENSMUST00000145846 Vmp1-002 86585020-86586994 processed_transcript
  ENSMUST00000150176 Vmp1-003 86585269-86586881 processed_transcript
  ENSMUST00000153971 Vmp1-004 86585272-86602295 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018315ENSMUST00000123590ENSMUST00000127267ENSMUST00000145846
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018315 7.594±0.35 2.686±0.72 20.469±4.05 11.860±1.93 6.406±1.45 4.606±0.55 5.339±0.72 11.618±1.43 14.242±4.19 8.050±1.15 5.473±4.68 5.730±4.31 27.269±8.02 3.732±1.50
ENSMUST00000123590 N/A N/A N/A 8.775±0.00 N/A N/A 5.036±0.00 N/A 11.850±0.00 N/A N/A N/A 29.256±0.00 N/A
ENSMUST00000127267 N/A 6.931±1.45 N/A N/A N/A N/A 6.496±1.54 11.237±0.47 19.329±4.12 N/A N/A 9.169±0.80 N/A N/A
ENSMUST00000145846 12.234±3.47 5.870±2.34 47.246±21.22 N/A 41.012±19.05 56.179±31.65 N/A 8.266±0.00 13.080±6.49 32.376±2.53 N/A 17.491±6.58 N/A 8.406±2.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000407 IDA pre-autophagosomal structure
GO:0000421 ISS autophagic vacuole membrane
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006914 IEA autophagy
GO:0007566 IDA embryo implantation
GO:0010506 IDA regulation of autophagy
GO:0016021 IEA integral component of membrane
GO:0016337 ISS single organismal cell-cell adhesion
GO:0034329 ISS cell junction assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012450 vmp1 vacuole membrane protein 1 protein_coding Danio_rerio
ENSG00000062716 VMP1 vacuole membrane protein 1 protein_coding Homo_sapiens

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