C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: vacuole membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586245 VMP1-011 ENSG00000062716 9606 + 17:59707650-59765111 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441
CIL_000567 CIL_000567_0002 CGP 17:59707192-59892945

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127267 Vmp1-006 processed_transcript Mus_musculus 0 457
ENSMUST00000018315 Vmp1-001 protein_coding Mus_musculus 0 457
ENSMUST00000139040 Vmp1-007 processed_transcript Mus_musculus 0 230
ENSMUST00000143991 Vmp1-008 protein_coding Mus_musculus 4e-29 132

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