C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | vacuole membrane protein 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000262291  |
VMP1-001 |
ENSG00000062716 |
9606 | + |
17:59707465-59841092  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00081F | CIL_00081F_0001 | VISTA | 17:59485788-60087415 |
| CIL_0008Y2 | CIL_0008Y2_0001 | VISTA | 17:59536739-60138754 |
| CIL_0008VS | CIL_0008VS_0001 | VISTA | 17:59556856-60159441 |
| CIL_000567 | CIL_000567_0002 | CGP | 17:59707192-59892945 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000407 | IEA | pre-autophagosomal structure |
| GO:0000421 | ISS | autophagic vacuole membrane |
| GO:0005515 | IPI | protein binding |
| GO:0005783 | IDA | endoplasmic reticulum |
| GO:0005886 | IEA | plasma membrane |
| GO:0006914 | IEA | autophagy |
| GO:0007566 | IEA | embryo implantation |
| GO:0010506 | ISS | regulation of autophagy |
| GO:0016021 | IEA | integral component of membrane |
| GO:0016337 | IMP | single organismal cell-cell adhesion |
| GO:0034329 | IMP | cell junction assembly |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000018315
|
Vmp1-001 | protein_coding | Mus_musculus | 0 | 1978 |
|
ENSMUST00000123590
|
Vmp1-005 | processed_transcript | Mus_musculus | 0 | 579 |
|
ENSMUST00000127267
|
Vmp1-006 | processed_transcript | Mus_musculus | 0 | 503 |
|
ENSMUST00000145846
|
Vmp1-002 | processed_transcript | Mus_musculus | 0 | 497 |
|
ENSMUST00000153971
|
Vmp1-004 | processed_transcript | Mus_musculus | 0 | 427 |
|
ENSMUST00000139040
|
Vmp1-007 | processed_transcript | Mus_musculus | 0 | 412 |
|
ENSMUST00000143991
|
Vmp1-008 | protein_coding | Mus_musculus | 0 | 315 |
|
ENSMUST00000150176
|
Vmp1-003 | processed_transcript | Mus_musculus | 0 | 213 |
