C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144143 Mmadhc-007 ENSMUSG00000026766 10090 - 2:50281141-50296681 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000144143
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000144143 4.180±0.00 19.355±6.59 12.875±2.63 11.796±2.75 4.515±0.00 7.109±2.43 7.431±1.98 17.046±3.59 9.615±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E0 CIL_0007E0_0002 CGP 2:50066429-50296801
CIL_0007DZ CIL_0007DZ_0002 CGP 2:50279881-51149111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0009235 IEA cobalamin metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303319 MMADHC-006 protein_coding Homo_sapiens 0 830
ENST00000422782 MMADHC-004 protein_coding Homo_sapiens 0 776
ENST00000423224 RP11-322A17.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000428879 MMADHC-001 protein_coding Homo_sapiens 0 830
ENST00000531489 RP1-145M24.1-001 processed_pseudogene Homo_sapiens 0 658

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