C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007DZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168288-ENSG00000115963 CGP 9606 2:149569634-150539011
GeneTranscriptPositionBiotype
ENSG00000115963 (RND3)
Rho family GTPase 3 		ENST00000263895 (RND3-001) 150468195-150487694 protein_coding
ENST00000375734 (RND3-002) 150468195-150487667 protein_coding
ENST00000409557 (RND3-007) 150468209-150485382 protein_coding
ENST00000439275 (RND3-003) 150474875-150539011 protein_coding
ENST00000454202 (RND3-004) 150474875-150487729 protein_coding
ENST00000466334 (RND3-008) 150470219-150475104 retained_intron
ENST00000472416 (RND3-005) 150471638-150487100 processed_transcript
ENST00000473639 (RND3-009) 150470141-150471960 retained_intron
ENST00000497865 (RND3-006) 150469777-150486866 retained_intron
ENSG00000162947 (AC007364.1)
 ENST00000295052 (AC007364.1-001) 149767506-149859191 lincRNA
ENST00000433174 (AC007364.1-002) 149816464-149857685 lincRNA
ENSG00000168288 (MMADHC)
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 		ENST00000303319 (MMADHC-006) 149569634-149587816 protein_coding
ENST00000422782 (MMADHC-004) 149569672-149587778 protein_coding
ENST00000428879 (MMADHC-001) 149569644-149587602 protein_coding
ENST00000460311 (MMADHC-005) 149586889-149587726 processed_transcript
ENSG00000207270 (RNU6-601P)
RNA, U6 small nuclear 601, pseudogene 		ENST00000384540 (RNU6-601P-201) 149610668-149610774 snRNA
ENSG00000230645 (AC016682.1)
 ENST00000437118 (AC016682.1-001) 150171423-150301080 lincRNA
ENSG00000231420 (AC113610.1)
 ENST00000429317 (AC113610.1-001) 150234892-150257007 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0007DZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026766-ENSMUSG00000017144 CGP 10090 2:50279881-51149111
GeneTranscriptPositionBiotype
ENSMUSG00000017144 (Rnd3)
Rho family GTPase 3 		ENSMUST00000017288 (Rnd3-001) 51130438-51149111 protein_coding
ENSMUST00000140864 (Rnd3-003) 51137069-51149094 retained_intron
ENSMUST00000154545 (Rnd3-002) 51131835-51149110 protein_coding
ENSMUSG00000026766 (Mmadhc)
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 		ENSMUST00000102769 (Mmadhc-001) 50279881-50296717 protein_coding
ENSMUST00000133768 (Mmadhc-002) 50287866-50296801 protein_coding
ENSMUST00000134480 (Mmadhc-004) 50280350-50296687 processed_transcript
ENSMUST00000140563 (Mmadhc-005) 50287853-50296676 processed_transcript
ENSMUST00000144143 (Mmadhc-007) 50281141-50296681 protein_coding
ENSMUST00000147345 (Mmadhc-003) 50279881-50296695 processed_transcript
ENSMUST00000152948 (Mmadhc-008) 50281166-50289199 processed_transcript
ENSMUST00000154254 (Mmadhc-006) 50281154-50296423 processed_transcript
ENSMUSG00000082483 (Gm13486)
predicted gene 13486 		ENSMUST00000119910 (Gm13486-001) 50409332-50409613 processed_pseudogene
ENSMUSG00000082846 (Gm13484)
predicted gene 13484 		ENSMUST00000120738 (Gm13484-001) 50657656-50658067 processed_pseudogene
ENSMUSG00000083270 (Gm13498)
predicted gene 13498 		ENSMUST00000119159 (Gm13498-001) 50909684-50911849 processed_pseudogene
ENSMUSG00000083449 (Gm13487)
predicted gene 13487 		ENSMUST00000122240 (Gm13487-001) 50522124-50522987 processed_pseudogene
ENSMUSG00000085429 (Gm13485)
predicted gene 13485 		ENSMUST00000146690 (Gm13485-001) 50547914-50552258 lincRNA
ENSMUSG00000085862 (Gm13483)
predicted gene 13483 		ENSMUST00000123699 (Gm13483-002) 50296864-50433967 processed_transcript
ENSMUST00000138528 (Gm13483-001) 50296810-50364507 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DZ_0001ENSG00000115963ENST00000263895ENST00000375734ENST00000409557ENST00000439275ENST00000454202ENST00000466334ENST00000472416ENST00000473639ENST00000497865ENSG00000162947ENST00000295052ENST00000433174ENSG00000168288ENST00000303319ENST00000422782ENST00000428879ENST00000460311ENSG00000207270ENST00000384540ENSG00000230645ENST00000437118ENSG00000231420ENST00000429317CIL_0007DZ_0002ENSMUSG00000017144ENSMUST00000017288ENSMUST00000140864ENSMUST00000154545ENSMUSG00000026766ENSMUST00000102769ENSMUST00000133768ENSMUST00000134480ENSMUST00000140563ENSMUST00000144143ENSMUST00000147345ENSMUST00000152948ENSMUST00000154254ENSMUSG00000082483ENSMUST00000119910ENSMUSG00000082846ENSMUST00000120738ENSMUSG00000083270ENSMUST00000119159ENSMUSG00000083449ENSMUST00000122240ENSMUSG00000085429ENSMUST00000146690ENSMUSG00000085862ENSMUST00000123699ENSMUST00000138528
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DZ_0001ENSG00000115963ENST00000263895ENST00000375734ENST00000409557ENST00000473639ENST00000497865ENSG00000162947ENST00000295052ENST00000433174ENSG00000168288ENST00000303319ENST00000422782ENST00000428879ENSG00000207270ENST00000384540ENSG00000230645ENST00000437118ENSG00000231420ENST00000429317CIL_0007DZ_0002ENSMUSG00000017144ENSMUST00000017288ENSMUST00000140864ENSMUST00000154545ENSMUSG00000026766ENSMUST00000102769ENSMUST00000134480ENSMUST00000140563ENSMUST00000144143ENSMUST00000147345ENSMUST00000152948ENSMUSG00000082483ENSMUST00000119910ENSMUSG00000082846ENSMUST00000120738ENSMUSG00000083270ENSMUST00000119159ENSMUSG00000083449ENSMUST00000122240ENSMUSG00000085429ENSMUST00000146690ENSMUSG00000085862ENSMUST00000123699ENSMUST00000138528
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115963 ENST00000263895 25.508±0.00 9.005±0.00 N/A 1.894±0.00 10.784±7.97 8.268±0.00 8.260±0.00 3.824±0.77 4.540±1.76 9.327±7.25 1.378±0.06 5.145±2.78 8.117±3.98 2.718±0.00
ENST00000375734 N/A N/A N/A 1.781±0.00 5.955±0.00 4.431±0.00 2.253±0.00 7.037±0.00 4.209±0.00 1.787±0.00 0.841±0.27 8.152±3.08 5.527±4.00 1.021±0.00
ENST00000409557 N/A 2.512±0.00 N/A N/A N/A N/A N/A N/A 4.165±0.00 N/A N/A 7.258±2.97 6.567±5.59 1.388±0.00
ENST00000439275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.587±0.00 N/A N/A N/A
ENST00000497865 N/A N/A N/A 3.662±0.00 N/A 5.105±0.00 3.309±0.00 N/A 6.161±0.00 N/A N/A 19.330±10.39 25.183±0.00 4.265±0.00
ENSG00000162947 ENST00000295052 N/A 0.006±0.00 0.347±0.00 N/A N/A 0.010±0.00 0.079±0.00 0.137±0.10 0.026±0.00 0.035±0.00 N/A 0.034±0.02 0.125±0.00 0.174±0.00
ENST00000433174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.414±0.06
ENSG00000168288 ENST00000303319 26.984±0.00 25.965±0.00 7.438±0.00 15.082±4.45 23.561±10.04 24.784±10.38 13.194±3.95 28.657±8.12 20.561±15.46 17.479±4.49 27.430±9.79 40.191±19.46 33.841±6.59 43.490±4.94
ENST00000422782 N/A N/A N/A N/A N/A N/A N/A N/A 10.290±0.00 N/A N/A N/A N/A N/A
ENST00000428879 N/A N/A N/A N/A N/A N/A N/A 4.990±0.00 N/A N/A N/A N/A N/A N/A
ENST00000460311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207270 ENST00000384540 N/A N/A N/A N/A N/A N/A N/A 0.525±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000230645 ENST00000437118 N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A 0.267±0.00
ENSG00000231420 ENST00000429317 N/A N/A N/A N/A N/A N/A 0.038±0.00 0.590±0.00 N/A N/A N/A N/A 0.073±0.00 0.075±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017144 ENSMUST00000017288 3.361±0.46 1.606±0.34 17.664±3.59 21.344±11.38 2.468±1.02 3.367±0.52 2.118±0.52 1.776±0.34 3.008±1.26 2.901±1.14 1.335±0.21 3.422±4.01 7.995±3.03 0.739±0.33
ENSMUST00000140864 N/A N/A N/A N/A 0.960±0.00 N/A N/A N/A 1.221±0.00 N/A N/A 1.506±0.00 N/A 0.501±0.00
ENSMUST00000154545 N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A
ENSMUSG00000026766 ENSMUST00000102769 21.390±5.02 9.662±0.00 39.214±5.86 22.002±8.48 17.489±13.74 7.204±2.18 33.619±3.87 22.596±5.92 27.029±8.81 10.834±3.57 51.425±5.84 14.864±10.79 27.388±8.69 24.637±12.17
ENSMUST00000133768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134480 N/A N/A N/A 12.503±0.00 N/A N/A N/A N/A N/A N/A N/A 26.705±0.00 35.763±11.89 116.691±0.00
ENSMUST00000140563 5.479±0.00 26.758±5.51 N/A N/A N/A N/A N/A N/A 8.757±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144143 4.180±0.00 19.355±6.59 N/A N/A 12.875±2.63 11.796±2.75 N/A 4.515±0.00 7.109±2.43 7.431±1.98 N/A 17.046±3.59 9.615±1.64 N/A
ENSMUST00000147345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.072±0.00
ENSMUST00000152948 N/A N/A N/A 31.153±0.00 N/A N/A N/A N/A N/A N/A N/A 65.248±0.00 74.288±10.37 50.349±0.00
ENSMUST00000154254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082483 ENSMUST00000119910 0.472±0.15 N/A 0.316±0.00 0.218±0.00 N/A N/A N/A N/A 0.088±0.00 N/A 0.232±0.05 0.462±0.13 0.283±0.21 N/A
ENSMUSG00000082846 ENSMUST00000120738 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083270 ENSMUST00000119159 0.020±0.00 N/A 0.006±0.00 0.006±0.00 N/A N/A N/A 0.030±0.01 N/A N/A N/A 0.014±0.00 0.011±0.00 0.070±0.05
ENSMUSG00000083449 ENSMUST00000122240 0.087±0.00 N/A 0.010±0.00 0.038±0.03 0.447±0.25 N/A 0.083±0.02 N/A 0.071±0.06 0.105±0.00 0.020±0.00 0.027±0.00 0.056±0.03 0.067±0.01
ENSMUSG00000085429 ENSMUST00000146690 0.091±0.00 N/A 0.041±0.00 N/A N/A N/A N/A N/A 0.012±0.00 N/A 0.067±0.00 0.063±0.00 0.044±0.02 N/A
ENSMUSG00000085862 ENSMUST00000123699 0.163±0.05 0.260±0.01 0.127±0.04 0.111±0.06 0.563±0.17 0.282±0.10 0.066±0.00 0.177±0.07 0.094±0.12 N/A 0.172±0.07 0.395±0.19 0.090±0.06 N/A
ENSMUST00000138528 0.217±0.00 0.237±0.00 0.186±0.14 0.103±0.00 N/A N/A 0.229±0.00 0.216±0.18 0.038±0.02 0.204±0.10 0.189±0.13 0.370±0.27 0.168±0.15 0.501±0.00

Loading