C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007DZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168288-ENSG00000115963 CGP 9606 2:149569634-150539011
GeneTranscriptPositionBiotype
ENSG00000115963 (RND3)
Rho family GTPase 3 		ENST00000263895 (RND3-001) 150468195-150487694 protein_coding
ENST00000375734 (RND3-002) 150468195-150487667 protein_coding
ENST00000409557 (RND3-007) 150468209-150485382 protein_coding
ENST00000439275 (RND3-003) 150474875-150539011 protein_coding
ENST00000454202 (RND3-004) 150474875-150487729 protein_coding
ENST00000466334 (RND3-008) 150470219-150475104 retained_intron
ENST00000472416 (RND3-005) 150471638-150487100 processed_transcript
ENST00000473639 (RND3-009) 150470141-150471960 retained_intron
ENST00000497865 (RND3-006) 150469777-150486866 retained_intron
ENSG00000162947 (AC007364.1)
 ENST00000295052 (AC007364.1-001) 149767506-149859191 lincRNA
ENST00000433174 (AC007364.1-002) 149816464-149857685 lincRNA
ENSG00000168288 (MMADHC)
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 		ENST00000303319 (MMADHC-006) 149569634-149587816 protein_coding
ENST00000422782 (MMADHC-004) 149569672-149587778 protein_coding
ENST00000428879 (MMADHC-001) 149569644-149587602 protein_coding
ENST00000460311 (MMADHC-005) 149586889-149587726 processed_transcript
ENSG00000207270 (RNU6-601P)
RNA, U6 small nuclear 601, pseudogene 		ENST00000384540 (RNU6-601P-201) 149610668-149610774 snRNA
ENSG00000230645 (AC016682.1)
 ENST00000437118 (AC016682.1-001) 150171423-150301080 lincRNA
ENSG00000231420 (AC113610.1)
 ENST00000429317 (AC113610.1-001) 150234892-150257007 lincRNA
CIL_0007DZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026766-ENSMUSG00000017144 CGP 10090 2:50279881-51149111
GeneTranscriptPositionBiotype
ENSMUSG00000017144 (Rnd3)
Rho family GTPase 3 		ENSMUST00000017288 (Rnd3-001) 51130438-51149111 protein_coding
ENSMUST00000140864 (Rnd3-003) 51137069-51149094 retained_intron
ENSMUST00000154545 (Rnd3-002) 51131835-51149110 protein_coding
ENSMUSG00000026766 (Mmadhc)
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 		ENSMUST00000102769 (Mmadhc-001) 50279881-50296717 protein_coding
ENSMUST00000133768 (Mmadhc-002) 50287866-50296801 protein_coding
ENSMUST00000134480 (Mmadhc-004) 50280350-50296687 processed_transcript
ENSMUST00000140563 (Mmadhc-005) 50287853-50296676 processed_transcript
ENSMUST00000144143 (Mmadhc-007) 50281141-50296681 protein_coding
ENSMUST00000147345 (Mmadhc-003) 50279881-50296695 processed_transcript
ENSMUST00000152948 (Mmadhc-008) 50281166-50289199 processed_transcript
ENSMUST00000154254 (Mmadhc-006) 50281154-50296423 processed_transcript
ENSMUSG00000082483 (Gm13486)
predicted gene 13486 		ENSMUST00000119910 (Gm13486-001) 50409332-50409613 processed_pseudogene
ENSMUSG00000082846 (Gm13484)
predicted gene 13484 		ENSMUST00000120738 (Gm13484-001) 50657656-50658067 processed_pseudogene
ENSMUSG00000083270 (Gm13498)
predicted gene 13498 		ENSMUST00000119159 (Gm13498-001) 50909684-50911849 processed_pseudogene
ENSMUSG00000083449 (Gm13487)
predicted gene 13487 		ENSMUST00000122240 (Gm13487-001) 50522124-50522987 processed_pseudogene
ENSMUSG00000085429 (Gm13485)
predicted gene 13485 		ENSMUST00000146690 (Gm13485-001) 50547914-50552258 lincRNA
ENSMUSG00000085862 (Gm13483)
predicted gene 13483 		ENSMUST00000123699 (Gm13483-002) 50296864-50433967 processed_transcript
ENSMUST00000138528 (Gm13483-001) 50296810-50364507 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DZ_0001ENSG00000115963ENST00000263895ENST00000375734ENST00000409557ENST00000439275ENST00000454202ENST00000466334ENST00000472416ENST00000473639ENST00000497865ENSG00000162947ENST00000295052ENST00000433174ENSG00000168288ENST00000303319ENST00000422782ENST00000428879ENST00000460311ENSG00000207270ENST00000384540ENSG00000230645ENST00000437118ENSG00000231420ENST00000429317CIL_0007DZ_0002ENSMUSG00000017144ENSMUST00000017288ENSMUST00000140864ENSMUST00000154545ENSMUSG00000026766ENSMUST00000102769ENSMUST00000133768ENSMUST00000134480ENSMUST00000140563ENSMUST00000144143ENSMUST00000147345ENSMUST00000152948ENSMUST00000154254ENSMUSG00000082483ENSMUST00000119910ENSMUSG00000082846ENSMUST00000120738ENSMUSG00000083270ENSMUST00000119159ENSMUSG00000083449ENSMUST00000122240ENSMUSG00000085429ENSMUST00000146690ENSMUSG00000085862ENSMUST00000123699ENSMUST00000138528
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DZ_0001ENSG00000115963ENST00000263895ENST00000375734ENST00000409557ENST00000473639ENST00000497865ENSG00000162947ENST00000295052ENST00000433174ENSG00000168288ENST00000303319ENST00000422782ENST00000428879ENSG00000207270ENST00000384540ENSG00000230645ENST00000437118ENSG00000231420ENST00000429317CIL_0007DZ_0002ENSMUSG00000017144ENSMUST00000017288ENSMUST00000140864ENSMUST00000154545ENSMUSG00000026766ENSMUST00000102769ENSMUST00000134480ENSMUST00000140563ENSMUST00000144143ENSMUST00000147345ENSMUST00000152948ENSMUSG00000082483ENSMUST00000119910ENSMUSG00000082846ENSMUST00000120738ENSMUSG00000083270ENSMUST00000119159ENSMUSG00000083449ENSMUST00000122240ENSMUSG00000085429ENSMUST00000146690ENSMUSG00000085862ENSMUST00000123699ENSMUST00000138528
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115963 ENST00000263895 25.508±0.00 9.005±0.00 N/A 1.894±0.00 10.784±7.97 8.268±0.00 8.260±0.00 3.824±0.77 4.540±1.76 9.327±7.25 1.378±0.06 5.145±2.78 8.117±3.98 2.718±0.00
ENST00000375734 N/A N/A N/A 1.781±0.00 5.955±0.00 4.431±0.00 2.253±0.00 7.037±0.00 4.209±0.00 1.787±0.00 0.841±0.27 8.152±3.08 5.527±4.00 1.021±0.00
ENST00000409557 N/A 2.512±0.00 N/A N/A N/A N/A N/A N/A 4.165±0.00 N/A N/A 7.258±2.97 6.567±5.59 1.388±0.00
ENST00000439275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.587±0.00 N/A N/A N/A
ENST00000497865 N/A N/A N/A 3.662±0.00 N/A 5.105±0.00 3.309±0.00 N/A 6.161±0.00 N/A N/A 19.330±10.39 25.183±0.00 4.265±0.00
ENSG00000162947 ENST00000295052 N/A 0.006±0.00 0.347±0.00 N/A N/A 0.010±0.00 0.079±0.00 0.137±0.10 0.026±0.00 0.035±0.00 N/A 0.034±0.02 0.125±0.00 0.174±0.00
ENST00000433174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.414±0.06
ENSG00000168288 ENST00000303319 26.984±0.00 25.965±0.00 7.438±0.00 15.082±4.45 23.561±10.04 24.784±10.38 13.194±3.95 28.657±8.12 20.561±15.46 17.479±4.49 27.430±9.79 40.191±19.46 33.841±6.59 43.490±4.94
ENST00000422782 N/A N/A N/A N/A N/A N/A N/A N/A 10.290±0.00 N/A N/A N/A N/A N/A
ENST00000428879 N/A N/A N/A N/A N/A N/A N/A 4.990±0.00 N/A N/A N/A N/A N/A N/A
ENST00000460311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207270 ENST00000384540 N/A N/A N/A N/A N/A N/A N/A 0.525±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000230645 ENST00000437118 N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A 0.267±0.00
ENSG00000231420 ENST00000429317 N/A N/A N/A N/A N/A N/A 0.038±0.00 0.590±0.00 N/A N/A N/A N/A 0.073±0.00 0.075±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017144 ENSMUST00000017288 3.361±0.46 1.606±0.34 17.664±3.59 21.344±11.38 2.468±1.02 3.367±0.52 2.118±0.52 1.776±0.34 3.008±1.26 2.901±1.14 1.335±0.21 3.422±4.01 7.995±3.03 0.739±0.33
ENSMUST00000140864 N/A N/A N/A N/A 0.960±0.00 N/A N/A N/A 1.221±0.00 N/A N/A 1.506±0.00 N/A 0.501±0.00
ENSMUST00000154545 N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A
ENSMUSG00000026766 ENSMUST00000102769 21.390±5.02 9.662±0.00 39.214±5.86 22.002±8.48 17.489±13.74 7.204±2.18 33.619±3.87 22.596±5.92 27.029±8.81 10.834±3.57 51.425±5.84 14.864±10.79 27.388±8.69 24.637±12.17
ENSMUST00000133768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134480 N/A N/A N/A 12.503±0.00 N/A N/A N/A N/A N/A N/A N/A 26.705±0.00 35.763±11.89 116.691±0.00
ENSMUST00000140563 5.479±0.00 26.758±5.51 N/A N/A N/A N/A N/A N/A 8.757±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144143 4.180±0.00 19.355±6.59 N/A N/A 12.875±2.63 11.796±2.75 N/A 4.515±0.00 7.109±2.43 7.431±1.98 N/A 17.046±3.59 9.615±1.64 N/A
ENSMUST00000147345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.072±0.00
ENSMUST00000152948 N/A N/A N/A 31.153±0.00 N/A N/A N/A N/A N/A N/A N/A 65.248±0.00 74.288±10.37 50.349±0.00
ENSMUST00000154254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082483 ENSMUST00000119910 0.472±0.15 N/A 0.316±0.00 0.218±0.00 N/A N/A N/A N/A 0.088±0.00 N/A 0.232±0.05 0.462±0.13 0.283±0.21 N/A
ENSMUSG00000082846 ENSMUST00000120738 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083270 ENSMUST00000119159 0.020±0.00 N/A 0.006±0.00 0.006±0.00 N/A N/A N/A 0.030±0.01 N/A N/A N/A 0.014±0.00 0.011±0.00 0.070±0.05
ENSMUSG00000083449 ENSMUST00000122240 0.087±0.00 N/A 0.010±0.00 0.038±0.03 0.447±0.25 N/A 0.083±0.02 N/A 0.071±0.06 0.105±0.00 0.020±0.00 0.027±0.00 0.056±0.03 0.067±0.01
ENSMUSG00000085429 ENSMUST00000146690 0.091±0.00 N/A 0.041±0.00 N/A N/A N/A N/A N/A 0.012±0.00 N/A 0.067±0.00 0.063±0.00 0.044±0.02 N/A
ENSMUSG00000085862 ENSMUST00000123699 0.163±0.05 0.260±0.01 0.127±0.04 0.111±0.06 0.563±0.17 0.282±0.10 0.066±0.00 0.177±0.07 0.094±0.12 N/A 0.172±0.07 0.395±0.19 0.090±0.06 N/A
ENSMUST00000138528 0.217±0.00 0.237±0.00 0.186±0.14 0.103±0.00 N/A N/A 0.229±0.00 0.216±0.18 0.038±0.02 0.204±0.10 0.189±0.13 0.370±0.27 0.168±0.15 0.501±0.00

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