C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bestrophin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144273 Best1-002 ENSMUSG00000037418 10090 - 19:9990548-9992915 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MusclePlacentaENSMUST00000144273
Transcript ID Muscle Placenta
ENSMUST00000144273 0.261±0.00 0.330±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000055 CIL_000055_0002 CGP 19:9982703-10001633
CIL_000056 CIL_000056_0002 CGP 19:9985174-10038380

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378043 BEST1-001 protein_coding Homo_sapiens 2e-39 169
ENST00000449131 BEST1-002 protein_coding Homo_sapiens 3e-39 169
ENST00000524877 BEST1-005 retained_intron Homo_sapiens 4e-39 169
ENST00000524926 BEST1-003 nonsense_mediated_decay Homo_sapiens 1e-39 169
ENST00000526988 BEST1-006 protein_coding Homo_sapiens 8e-40 169
ENST00000529265 BEST1-008 retained_intron Homo_sapiens 8.99999e-40 169
ENST00000533521 BEST1-007 retained_intron Homo_sapiens 7e-40 169
ENST00000534553 BEST1-004 protein_coding Homo_sapiens 4e-39 167

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