C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144326 Ranbp9-201 ENSMUSG00000038546 10090 - 13:43402673-43480973 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000144326
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000144326 12.722±1.33 6.089±1.20 14.653±1.82 14.894±0.94 9.103±2.76 4.627±1.11 6.082±1.42 5.888±1.71 5.355±2.18 7.555±1.93 10.686±0.65 8.629±4.12 12.732±1.93 53.029±16.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MO CIL_0008MO_0002 VISTA 13:42895920-43497079
CIL_0003I9 CIL_0003I9_0002 CGP 13:43370710-43402858
CIL_0003IG CIL_0003IG_0002 CGP 13:43398376-43480973
CIL_0003IF CIL_0003IF_0002 CGP 13:43402673-43560191

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISA nucleus
GO:0005737 ISA cytoplasm
GO:0008536 ISA Ran GTPase binding
GO:0019899 IEA enzyme binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000011619 RANBP9-001 protein_coding Homo_sapiens 0 4263
ENST00000469916 RANBP9-002 processed_transcript Homo_sapiens 0 582
ENST00000539980 RANBP9-201 protein_coding Homo_sapiens 0 3506

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