C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: patched homolog 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144620 Ptch2-002 ENSMUSG00000028681 10090 + 4:117096096-117115383 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverMusclePlacentaTestisENSMUST00000144620
Transcript ID Bladder Brain Heart Kidney Liver Muscle Placenta Testis
ENSMUST00000144620 0.191±0.00 0.421±0.26 0.118±0.00 0.376±0.12 0.094±0.01 0.246±0.10 0.023±0.00 2.435±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008544 IMP epidermis development
GO:0042633 IMP hair cycle
GO:0043588 IMP skin development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372192 PTCH2-001 protein_coding Homo_sapiens 0 4372
ENST00000447098 PTCH2-201 protein_coding Homo_sapiens 0 4117

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