C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apoptotic chromatin condensation inducer 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148754 Acin1-201 ENSMUSG00000022185 10090 - 14:54642162-54653701 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000148754
Transcript ID Adipose Bladder Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000148754 14.697±4.29 19.044±0.00 8.850±2.30 5.457±0.00 10.237±1.05 8.637±5.65 12.559±0.84 19.224±4.04 27.127±11.44 10.827±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0006MN CIL_0006MN_0002 CGP 14:54642161-54690742

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 ISS nucleus
GO:0005730 IDA nucleolus
GO:0006397 IEA mRNA processing
GO:0006915 ISS apoptotic process
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0030218 ISS erythrocyte differentiation
GO:0030263 ISS apoptotic chromosome condensation
GO:0043065 ISS positive regulation of apoptotic process
GO:0045657 ISS positive regulation of monocyte differentiation
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0061574 ISS ASAP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262710 ACIN1-003 protein_coding Homo_sapiens 0 2294
ENST00000338631 ACIN1-002 protein_coding Homo_sapiens 0 2294
ENST00000357481 ACIN1-001 protein_coding Homo_sapiens 0 2366
ENST00000397341 ACIN1-004 protein_coding Homo_sapiens 0 2368
ENST00000457657 ACIN1-201 protein_coding Homo_sapiens 0 2294
ENST00000473758 ACIN1-005 nonsense_mediated_decay Homo_sapiens 0 1814
ENST00000553790 ACIN1-020 retained_intron Homo_sapiens 0 490
ENST00000554680 ACIN1-017 retained_intron Homo_sapiens 0 883
ENST00000554979 ACIN1-012 retained_intron Homo_sapiens 0 248
ENST00000555053 ACIN1-006 protein_coding Homo_sapiens 0 1797
ENST00000555395 ACIN1-021 retained_intron Homo_sapiens 0 374
ENST00000555478 ACIN1-019 retained_intron Homo_sapiens 0 961
ENST00000555566 ACIN1-014 protein_coding Homo_sapiens 0 490
ENST00000555807 ACIN1-016 retained_intron Homo_sapiens 0 595
ENST00000556052 ACIN1-018 retained_intron Homo_sapiens 0 407
ENST00000557039 ACIN1-015 retained_intron Homo_sapiens 0 313
ENST00000557432 ACIN1-013 processed_transcript Homo_sapiens 0 248
ENST00000557515 ACIN1-007 protein_coding Homo_sapiens 0 2350
ENST00000605057 ACIN1-022 protein_coding Homo_sapiens 0 2294

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