C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDC1 transmembrane nucleoporin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149366 Ndc1-002 ENSMUSG00000028614 10090 + 4:107367915-107416323 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000149366
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000149366 4.217±0.51 0.354±0.00 2.361±1.27 2.190±0.49 1.007±0.17 1.244±0.29 1.536±0.56 0.758±0.00 0.461±0.00 4.435±1.93 0.863±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IDA nuclear pore
GO:0005737 IDA cytoplasm
GO:0007129 IMP synapsis
GO:0007283 IMP spermatogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371429 NDC1-001 protein_coding Homo_sapiens 0 1583

Loading