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C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | armadillo repeat gene deleted in velo-cardio-facial syndrome | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000150253  |
Arvcf-004 |
ENSMUSG00000000325 |
10090 | + |
16:18392588-18407076  |
nonsense_mediated_decay |
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Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00095F | CIL_00095F_0002 | VISTA | 16:18254168-18857637 |
| CIL_00099J | CIL_00099J_0002 | VISTA | 16:18285741-18886132 |
| CIL_0008BW | CIL_0008BW_0002 | VISTA | 16:18293232-18893684 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0005737 | IDA | cytoplasm |
| GO:0005886 | IDA | plasma membrane |
| GO:0016339 | TAS | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000263207
|
ARVCF-001 | protein_coding | Homo_sapiens | 0 | 1057 |
|
ENST00000401994
|
ARVCF-011 | protein_coding | Homo_sapiens | 0 | 1003 |
|
ENST00000406259
|
ARVCF-013 | protein_coding | Homo_sapiens | 0 | 1062 |
|
ENST00000406522
|
ARVCF-012 | protein_coding | Homo_sapiens | 0 | 1062 |
|
ENST00000480792
|
ARVCF-009 | processed_transcript | Homo_sapiens | 0 | 514 |
|
ENST00000487793
|
ARVCF-005 | processed_transcript | Homo_sapiens | 2e-23 | 113 |
|
ENST00000495096
|
ARVCF-002 | retained_intron | Homo_sapiens | 0 | 926 |
