C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: armadillo repeat gene deleted in velocardiofacial syndrome
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000495096 ARVCF-002 ENSG00000099889 9606 - 22:19969898-19979416 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryTestisENST00000495096
Transcript ID Muscle Ovary Testis
ENST00000495096 1.609±0.00 18.404±0.00 5.695±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BW CIL_0008BW_0001 VISTA 22:19453681-20054184
CIL_00099J CIL_00099J_0001 VISTA 22:19461833-20062532
CIL_00095F CIL_00095F_0001 VISTA 22:19497462-20100487
CIL_0006HK CIL_0006HK_0002 CGP 22:19969896-20065926

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115610 Arvcf-005 protein_coding Mus_musculus 0 1406
ENSMUST00000115612 Arvcf-002 protein_coding Mus_musculus 0 1406
ENSMUST00000115614 Arvcf-003 protein_coding Mus_musculus 0 1406
ENSMUST00000184717 ARVCF-201 protein_coding Mus_musculus 0 1339
ENSMUST00000090103 Arvcf-201 protein_coding Mus_musculus 0 1339
ENSMUST00000115613 Arvcf-001 protein_coding Mus_musculus 0 1339
ENSMUST00000150253 Arvcf-004 nonsense_mediated_decay Mus_musculus 0 926
ENSMUST00000150484 Arvcf-007 processed_transcript Mus_musculus 0 531
ENSMUST00000126183 Arvcf-008 retained_intron Mus_musculus 0 394

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