C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DiGeorge syndrome critical region gene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151266 Dgcr6-001 ENSMUSG00000003531 10090 + 16:18066403-18071363 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000151266
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000151266 33.769±5.55 49.192±5.22 45.599±8.26 33.601±6.19 27.377±2.62 22.441±2.73 14.210±1.78 48.543±3.74 24.969±15.04 19.865±0.97 12.486±4.08 37.883±4.09 5.548±1.95 92.766±3.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0005EQ CIL_0005EQ_0003 CGP 16:18052860-18090203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000248879 DGCR6L-001 protein_coding Homo_sapiens 0 691
ENST00000405465 DGCR6L-002 protein_coding Homo_sapiens 0 257
ENST00000443409 DGCR6L-003 nonsense_mediated_decay Homo_sapiens 0 331

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