C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 5830415F09 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151903 5830415F09Rik-002 ENSMUSG00000028331 10090 - 4:46376505-46389418 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLiverLungMuscleOvaryENSMUST00000151903
Transcript ID Adipose Adrenal Brain Colon Liver Lung Muscle Ovary
ENSMUST00000151903 0.164±0.00 0.391±0.00 0.324±0.01 0.274±0.00 2.086±1.21 0.361±0.00 0.069±0.00 0.470±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0002 VISTA 4:46052102-46653592
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_00029R CIL_00029R_0002 CGP 4:46343609-46389437
CIL_00029S CIL_00029S_0002 CGP 4:46376505-46413506

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375117 C9orf156-002 protein_coding Homo_sapiens 0 436
ENST00000375118 C9orf156-005 protein_coding Homo_sapiens 0 364
ENST00000375119 C9orf156-001 protein_coding Homo_sapiens 0 547
ENST00000455506 C9orf156-006 protein_coding Homo_sapiens 0 435
ENST00000471580 C9orf156-003 processed_transcript Homo_sapiens 0 200
ENST00000478126 C9orf156-004 processed_transcript Homo_sapiens 0 296
ENST00000611338 C9orf156-201 protein_coding Homo_sapiens 0 364

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