C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5637
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153890 Gm5637-001 ENSMUSG00000046993 10090 - X:60045111-60046229 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000153890
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000153890 0.939±0.34 0.143±0.08 0.020±0.00 0.768±0.33 0.688±0.33 0.150±0.12 0.072±0.02 0.042±0.03 0.219±0.04 0.682±0.53 0.162±0.15 1.365±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PO CIL_0000PO_0003 CGP X:59999464-60179089

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000033713 arpc1b-001 protein_coding Danio_rerio 0 455
ENST00000252725 ARPC1B-001 protein_coding Homo_sapiens 0 1336
ENST00000414376 ARPC1B-008 protein_coding Homo_sapiens 0 444
ENST00000417330 ARPC1B-014 protein_coding Homo_sapiens 0 558
ENST00000418347 ARPC1B-013 protein_coding Homo_sapiens 0 370
ENST00000427217 ARPC1B-016 protein_coding Homo_sapiens 0 569
ENST00000429246 ARPC1B-009 protein_coding Homo_sapiens 1e-22 110
ENST00000431816 ARPC1B-015 protein_coding Homo_sapiens 0 569
ENST00000432343 ARPC1B-024 nonsense_mediated_decay Homo_sapiens 0 560
ENST00000441989 ARPC1A-003 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000443222 ARPC1B-007 protein_coding Homo_sapiens 0 470
ENST00000445924 ARPC1B-018 nonsense_mediated_decay Homo_sapiens 0 723
ENST00000451682 ARPC1B-003 protein_coding Homo_sapiens 0 1336
ENST00000455009 ARPC1B-012 protein_coding Homo_sapiens 0 547
ENST00000458033 ARPC1B-017 protein_coding Homo_sapiens 0 569
ENST00000474880 ARPC1B-020 processed_transcript Homo_sapiens 0 560
ENST00000481997 ARPC1B-005 retained_intron Homo_sapiens 0 649
ENST00000484375 ARPC1B-025 retained_intron Homo_sapiens 0 863
ENST00000484600 ARPC1B-011 retained_intron Homo_sapiens 0 697
ENST00000491294 ARPC1B-006 retained_intron Homo_sapiens 0 368
ENST00000493403 ARPC1B-019 processed_transcript Homo_sapiens 0 424

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