C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptoporin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153954 Synpr-005 ENSMUSG00000056296 10090 + 14:13453958-13563045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonMuscleOvaryTestisENSMUST00000153954
Transcript ID Breast Colon Muscle Ovary Testis
ENSMUST00000153954 0.519±0.44 0.363±0.21 0.020±0.00 1.021±0.47 0.159±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078O CIL_00078O_0002 CGP 14:13284780-13683148

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0030285 IBA integral component of synaptic vesicle membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295894 SYNPR-004 protein_coding Homo_sapiens 0 667
ENST00000460711 SYNPR-007 protein_coding Homo_sapiens 0 215
ENST00000465156 SYNPR-015 protein_coding Homo_sapiens 0 403
ENST00000472899 SYNPR-013 protein_coding Homo_sapiens 0 233
ENST00000478744 SYNPR-014 processed_transcript Homo_sapiens 0 409
ENST00000479198 SYNPR-006 protein_coding Homo_sapiens 0 418
ENST00000498449 SYNPR-005 nonsense_mediated_decay Homo_sapiens 0 619

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