C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00078O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163630-ENSG00000188817 CGP 9606 3:63228315-63679020
GeneTranscriptPositionBiotype
ENSG00000163630 (SYNPR)
synaptoporin 		ENST00000295894 (SYNPR-004) 63443077-63616921 protein_coding
ENST00000450542 (SYNPR-002) 63278318-63615536 protein_coding
ENST00000460142 (SYNPR-010) 63278666-63556741 processed_transcript
ENST00000460711 (SYNPR-007) 63443333-63616920 protein_coding
ENST00000465156 (SYNPR-015) 63443337-63615595 protein_coding
ENST00000467934 (SYNPR-012) 63443077-63556722 processed_transcript
ENST00000468110 (SYNPR-003) 63278328-63615920 nonsense_mediated_decay
ENST00000472899 (SYNPR-013) 63443310-63556741 protein_coding
ENST00000478300 (SYNPR-001) 63278123-63616921 protein_coding
ENST00000478456 (SYNPR-008) 63228315-63556696 processed_transcript
ENST00000478744 (SYNPR-014) 63443333-63610513 processed_transcript
ENST00000479198 (SYNPR-006) 63443328-63616921 protein_coding
ENST00000493532 (SYNPR-011) 63351429-63609316 processed_transcript
ENST00000496889 (SYNPR-009) 63278651-63556649 processed_transcript
ENST00000498449 (SYNPR-005) 63443114-63615846 nonsense_mediated_decay
ENSG00000188817 (SNTN)
sentan, cilia apical structure protein 		ENST00000343837 (SNTN-002) 63652668-63664721 protein_coding
ENST00000469440 (SNTN-003) 63652679-63664060 protein_coding
ENST00000496807 (SNTN-001) 63652698-63679020 protein_coding
ENSG00000241359 (SYNPR-AS1)
SYNPR antisense RNA 1 		ENST00000488201 (SYNPR-AS1-001) 63423596-63550051 antisense
CIL_00078O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056296-ENSMUSG00000044772 CGP 10090 14:13284780-13683148
GeneTranscriptPositionBiotype
ENSMUSG00000044772 (Sntn)
sentan, cilia apical structure protein 		ENSMUST00000061045 (Sntn-001) 13670876-13683148 protein_coding
ENSMUSG00000056296 (Synpr)
synaptoporin 		ENSMUST00000070323 (Synpr-001) 13284780-13615459 protein_coding
ENSMUST00000112656 (Synpr-002) 13454057-13615459 protein_coding
ENSMUST00000145700 (Synpr-003) 13453984-13566712 retained_intron
ENSMUST00000147677 (Synpr-004) 13454071-13610502 retained_intron
ENSMUST00000153954 (Synpr-005) 13453958-13563045 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078O_0001ENSG00000163630ENST00000295894ENST00000450542ENST00000460142ENST00000460711ENST00000465156ENST00000467934ENST00000468110ENST00000472899ENST00000478300ENST00000478456ENST00000478744ENST00000479198ENST00000493532ENST00000496889ENST00000498449ENSG00000188817ENST00000343837ENST00000469440ENST00000496807ENSG00000241359ENST00000488201CIL_00078O_0002ENSMUSG00000044772ENSMUST00000061045ENSMUSG00000056296ENSMUST00000070323ENSMUST00000112656ENSMUST00000145700ENSMUST00000147677ENSMUST00000153954
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078O_0001ENSG00000163630ENST00000295894ENST00000450542ENST00000460142ENST00000460711ENST00000467934ENST00000468110ENST00000478300ENST00000478456ENST00000479198ENST00000498449ENSG00000188817ENST00000343837ENST00000469440ENST00000496807ENSG00000241359ENST00000488201CIL_00078O_0002ENSMUSG00000044772ENSMUST00000061045ENSMUSG00000056296ENSMUST00000070323ENSMUST00000112656ENSMUST00000145700ENSMUST00000147677ENSMUST00000153954
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163630 ENST00000295894 N/A N/A N/A 5.621±0.94 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450542 N/A N/A N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460142 N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A
ENST00000460711 N/A N/A N/A 5.283±0.00 0.014±0.00 N/A N/A N/A N/A N/A N/A 0.017±0.01 N/A N/A
ENST00000465156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A
ENST00000468110 N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A 0.056±0.00 N/A
ENST00000472899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478300 N/A N/A N/A 8.889±3.37 N/A 0.041±0.00 N/A N/A N/A 0.016±0.00 N/A 0.004±0.00 0.058±0.04 0.012±0.00
ENST00000478456 N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000478744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479198 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A
ENST00000493532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498449 N/A N/A N/A N/A N/A 0.155±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188817 ENST00000343837 N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A 6.123±0.19 N/A 5.876±5.82 0.061±0.00 0.502±0.42
ENST00000469440 N/A N/A N/A N/A N/A 0.207±0.02 N/A N/A N/A N/A N/A 0.069±0.00 0.056±0.01 N/A
ENST00000496807 0.021±0.00 0.042±0.00 N/A 0.022±0.01 0.003±0.00 0.008±0.00 0.006±0.00 0.009±0.00 0.005±0.00 N/A 0.016±0.00 N/A N/A N/A
ENSG00000241359 ENST00000488201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A 0.047±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000044772 ENSMUST00000061045 N/A N/A N/A 0.041±0.00 N/A N/A 0.400±0.01 N/A N/A 4.787±1.18 N/A 3.932±1.98 0.029±0.00 N/A
ENSMUSG00000056296 ENSMUST00000070323 0.434±0.02 1.643±0.28 0.104±0.02 3.490±3.35 0.112±0.00 0.113±0.06 0.039±0.00 N/A 0.005±0.00 N/A 0.012±0.00 0.191±0.13 0.016±0.01 0.048±0.01
ENSMUST00000112656 0.015±0.00 N/A 0.017±0.00 8.154±2.29 0.076±0.03 0.047±0.00 N/A 0.018±0.00 0.007±0.00 0.079±0.00 0.020±0.00 0.011±0.00 0.054±0.00 0.028±0.00
ENSMUST00000145700 N/A N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147677 N/A N/A N/A N/A 0.066±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A 0.007±0.00
ENSMUST00000153954 N/A N/A N/A N/A 0.519±0.44 0.363±0.21 N/A N/A N/A N/A 0.020±0.00 1.021±0.47 N/A 0.159±0.09

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