C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154970 Pif1-003 ENSMUSG00000041064 10090 + 9:65587193-65595962 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000154970
Transcript ID Brain Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000154970 0.501±0.16 0.197±0.00 0.083±0.00 1.513±0.76 0.027±0.00 0.395±0.15 0.505±0.06 0.115±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0002 VISTA 9:65081642-65684657
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 IEA telomere maintenance
GO:0003678 IEA DNA helicase activity
GO:0006281 IEA DNA repair
GO:0032508 IEA DNA duplex unwinding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268043 PIF1-001 protein_coding Homo_sapiens 0 1103
ENST00000333425 PIF1-002 protein_coding Homo_sapiens 0 1103
ENST00000558380 PIF1-010 retained_intron Homo_sapiens 0 662
ENST00000558547 PIF1-011 retained_intron Homo_sapiens 0 202
ENST00000559239 PIF1-006 protein_coding Homo_sapiens 0 1103
ENST00000559872 PIF1-009 retained_intron Homo_sapiens 1e-34 150
ENST00000560444 PIF1-004 retained_intron Homo_sapiens 2e-36 158

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