C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156797 Smarcal1-003 ENSMUSG00000039354 10090 + 1:72583251-72599399 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000156797
Transcript ID Breast
ENSMUST00000156797 1.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AN CIL_0000AN_0003 CGP 1:72427112-72633134

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357276 SMARCAL1-001 protein_coding Homo_sapiens 0 230
ENST00000358207 SMARCAL1-003 protein_coding Homo_sapiens 0 230
ENST00000425815 SMARCAL1-005 protein_coding Homo_sapiens 4e-32 141
ENST00000430374 SMARCAL1-004 protein_coding Homo_sapiens 0 230
ENST00000434435 SMARCAL1-007 protein_coding Homo_sapiens 0 230
ENST00000444508 SMARCAL1-006 protein_coding Homo_sapiens 0 230

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