C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activation-induced cytidine deaminase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160685 Aicda-002 ENSMUSG00000040627 10090 + 6:122560485-122563076 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000160685
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000160685 0.055±0.03 0.007±0.00 0.139±0.07 0.096±0.02 0.144±0.06 0.047±0.01 0.042±0.00 0.169±0.09 0.039±0.03 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004126 IDA cytidine deaminase activity
GO:0005634 IC nucleus
GO:0008270 IEA zinc ion binding
GO:0009972 IDA cytidine deamination
GO:0045190 IMP isotype switching
GO:0071222 IMP cellular response to lipopolysaccharide

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229335 AICDA-001 protein_coding Homo_sapiens 0 603
ENST00000537228 AICDA-005 protein_coding Homo_sapiens 0 337
ENST00000543081 AICDA-004 protein_coding Homo_sapiens 0 335
ENST00000545512 AICDA-002 protein_coding Homo_sapiens 0 531
ENST00000545576 AICDA-006 retained_intron Homo_sapiens 0 335

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