C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16581
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160730 Gm16581-001 ENSMUSG00000089670 10090 + 1:55127297-55128287 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000160730
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000160730 0.034±0.01 0.079±0.04 0.779±0.03 0.422±0.29 0.020±0.00 0.060±0.02 0.042±0.00 0.038±0.02 0.191±0.20 0.026±0.00 0.047±0.04 0.043±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_00042D CIL_00042D_0003 CGP 1:55088132-55154899

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000139452 pde4d-001 protein_coding Danio_rerio 0.00004 55
ENST00000301740 SRRM2-001 protein_coding Homo_sapiens 0 710
ENST00000570705 SRRM2-025 retained_intron Homo_sapiens 4.2039e-45 185
ENST00000571041 SRRM2-024 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000572721 SRRM2-021 processed_transcript Homo_sapiens 0 375
ENST00000572883 SRRM2-020 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000573311 SRRM2-023 retained_intron Homo_sapiens 4.2039e-45 185
ENST00000574593 SRRM2-022 processed_transcript Homo_sapiens 0 710
ENST00000576878 SRRM2-026 retained_intron Homo_sapiens 8.96831e-44 182

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