C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hepatoma-derived growth factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357325 HDGF-001 ENSG00000143321 9606 - 1:156742107-156751744 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357325
Transcript ID Bladder Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357325 3.131±0.00 7.828±0.00 31.199±21.27 31.342±27.64 63.209±0.00 86.234±79.10 38.627±30.91 64.521±15.46 35.359±14.79 10.583±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0001222 IPI transcription corepressor binding
GO:0003677 IEA DNA binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0007165 NAS signal transduction
GO:0008083 IEA growth factor activity
GO:0008201 IEA heparin binding
GO:0008283 TAS cell proliferation
GO:0017053 IDA transcriptional repressor complex
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005017 Hdgf-001 protein_coding Mus_musculus 0 1376
ENSMUST00000159492 Hdgf-002 protein_coding Mus_musculus 0 728
ENSMUST00000160198 Hdgf-005 processed_transcript Mus_musculus 0 488
ENSMUST00000161616 Hdgf-004 processed_transcript Mus_musculus 0 475
ENSMUST00000162631 Hdgf-003 nonsense_mediated_decay Mus_musculus 0 353

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