C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163168 Hnrnpf-002 ENSMUSG00000042079 10090 + 6:117906849-117925619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000163168
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000163168 6.920±0.33 13.480±1.85 10.495±2.01 12.368±5.60 9.258±0.56 2.156±0.34 4.439±0.19 4.547±1.01 12.247±3.55 2.177±0.54 10.974±2.07 13.205±1.73

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003727 ISS single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0043484 ISS regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337970 HNRNPF-004 protein_coding Homo_sapiens 0 2571
ENST00000356053 HNRNPF-005 protein_coding Homo_sapiens 0 2571
ENST00000357065 HNRNPF-001 protein_coding Homo_sapiens 0 2571
ENST00000443950 HNRNPF-201 protein_coding Homo_sapiens 0 2571
ENST00000477108 HNRNPF-003 processed_transcript Homo_sapiens 0 459
ENST00000498176 HNRNPF-002 processed_transcript Homo_sapiens 0 370
ENST00000544000 HNRNPF-202 protein_coding Homo_sapiens 0 2571

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