C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EMI domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163299 Emid1-201 ENSMUSG00000034164 10090 - 11:5106266-5152240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000163299
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000163299 2.594±0.00 1.367±0.00 0.703±0.00 1.764±0.00 0.985±0.03 0.089±0.05 2.386±0.00 2.568±0.00 1.246±0.58 0.626±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MN CIL_0004MN_0002 CGP 11:5098926-5152257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000101004 col17a1a-201 protein_coding Danio_rerio 0.000003 58
ENSDART00000142957 col17a1a-001 protein_coding Danio_rerio 0.000003 58
ENST00000334018 EMID1-003 protein_coding Homo_sapiens 0 1291
ENST00000404755 EMID1-001 protein_coding Homo_sapiens 0 857
ENST00000404820 EMID1-002 protein_coding Homo_sapiens 0 1059
ENST00000429226 EMID1-006 protein_coding Homo_sapiens 0 558
ENST00000430127 EMID1-005 protein_coding Homo_sapiens 0 339
ENST00000435427 EMID1-008 nonsense_mediated_decay Homo_sapiens 1e-29 134
ENST00000484039 EMID1-007 processed_transcript Homo_sapiens 0 486
ENST00000487477 EMID1-011 retained_intron Homo_sapiens 0 436
ENST00000488820 EMID1-010 retained_intron Homo_sapiens 0 492

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