C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonucleic acid binding protein S1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163717 Rnps1-203 ENSMUSG00000034681 10090 + 17:24414675-24425895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163717 2.914±1.34 5.213±0.69 6.575±0.40 23.691±10.99 8.440±0.00 3.161±0.00 5.135±0.41 2.345±0.34 4.361±2.00 4.474±0.69 8.137±1.47 8.443±4.59 8.106±1.34 4.128±1.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043065 ISS positive regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0061574 ISS ASAP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301730 RNPS1-003 protein_coding Homo_sapiens 0 1323
ENST00000320225 RNPS1-001 protein_coding Homo_sapiens 0 1321
ENST00000397086 RNPS1-005 protein_coding Homo_sapiens 0 1321
ENST00000507437 RNPS1P1-001 processed_pseudogene Homo_sapiens 0 1109
ENST00000561518 RNPS1-014 protein_coding Homo_sapiens 0 1229
ENST00000561718 RNPS1-004 protein_coding Homo_sapiens 0 1042
ENST00000562690 RNPS1-013 protein_coding Homo_sapiens 0 660
ENST00000563857 RNPS1-023 retained_intron Homo_sapiens 0 459
ENST00000564311 RNPS1-024 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000564601 RNPS1-015 protein_coding Homo_sapiens 0 846
ENST00000564764 RNPS1-020 protein_coding Homo_sapiens 0 765
ENST00000564822 RNPS1-012 protein_coding Homo_sapiens 0 307
ENST00000565333 RNPS1-019 protein_coding Homo_sapiens 0 488
ENST00000565589 RNPS1-021 protein_coding Homo_sapiens 0 370
ENST00000565678 RNPS1-007 protein_coding Homo_sapiens 0 1323
ENST00000565870 RNPS1-022 protein_coding Homo_sapiens 0 1290
ENST00000566180 RNPS1-017 protein_coding Homo_sapiens 0 717
ENST00000566397 RNPS1-009 protein_coding Homo_sapiens 0 1040
ENST00000566458 RNPS1-002 protein_coding Homo_sapiens 0 1040
ENST00000567147 RNPS1-027 protein_coding Homo_sapiens 0 765
ENST00000568631 RNPS1-006 protein_coding Homo_sapiens 0 1325
ENST00000569598 RNPS1-025 protein_coding Homo_sapiens 0 701
ENST00000569709 RNPS1-018 protein_coding Homo_sapiens 0 518
ENST00000570051 RNPS1-026 retained_intron Homo_sapiens 0 765

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