C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: centrosomal protein 290
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164751 Cep290-201 ENSMUSG00000019971 10090 + 10:100488289-100573655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164751
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164751 0.084±0.00 0.338±0.02 2.711±2.28 0.113±0.02 0.152±0.05 0.099±0.02 0.141±0.00 0.924±0.64 0.239±0.08 0.135±0.07 1.115±1.41 1.087±0.59 23.926±38.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000930 ISS gamma-tubulin complex
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005813 ISS centrosome
GO:0005829 ISS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0015031 IMP protein transport
GO:0016020 IEA membrane
GO:0030814 IMP regulation of cAMP metabolic process
GO:0030902 ISS hindbrain development
GO:0030916 ISS otic vesicle formation
GO:0032391 IDA photoreceptor connecting cilium
GO:0034451 IDA:ISS centriolar satellite
GO:0036038 IDA TCTN-B9D complex
GO:0036064 IEA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0042462 ISS eye photoreceptor cell development
GO:0043234 ISO protein complex
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0048793 ISS pronephros development
GO:0060041 IMP retina development in camera-type eye
GO:0060271 IMP cilium morphogenesis
GO:0070201 ISO regulation of establishment of protein localization
GO:0090316 ISS positive regulation of intracellular protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309041 CEP290-201 protein_coding Homo_sapiens 0 7943
ENST00000356891 C12orf29-001 protein_coding Homo_sapiens 0 248
ENST00000397838 CEP290-202 protein_coding Homo_sapiens 0 2591
ENST00000547691 CEP290-005 protein_coding Homo_sapiens 0 5040
ENST00000547926 CEP290-004 nonsense_mediated_decay Homo_sapiens 0 1953
ENST00000550333 C12orf29-003 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000550962 CEP290-006 protein_coding Homo_sapiens 0 577
ENST00000552770 CEP290-007 protein_coding Homo_sapiens 0 381
ENST00000552810 CEP290-001 protein_coding Homo_sapiens 0 8004
ENST00000604024 CEP290-003 protein_coding Homo_sapiens 0 1550

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