C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164763 Rev3l-201 ENSMUSG00000019841 10090 + 10:39732364-39875206 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164763
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164763 2.514±1.29 1.282±0.19 1.698±0.00 3.597±1.49 1.291±0.36 0.704±0.05 0.456±0.20 0.339±0.13 0.645±0.33 1.382±0.19 0.938±0.25 4.284±1.11 0.982±0.58 2.567±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0002 VISTA 10:39357714-39964005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0003887 IBA DNA-directed DNA polymerase activity
GO:0005634 IBA nucleus
GO:0005694 IBA chromosome
GO:0005730 IDA nucleolus
GO:0006260 IEA DNA replication
GO:0006281 IMP DNA repair
GO:0016035 ISS zeta DNA polymerase complex
GO:0019985 IBA translesion synthesis
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358835 REV3L-201 protein_coding Homo_sapiens 0 11790
ENST00000368802 REV3L-009 protein_coding Homo_sapiens 0 11810
ENST00000368805 REV3L-010 protein_coding Homo_sapiens 0 11810
ENST00000413831 REV3L-003 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000422377 REV3L-001 nonsense_mediated_decay Homo_sapiens 0 11590
ENST00000434009 REV3L-008 nonsense_mediated_decay Homo_sapiens 0 11590
ENST00000435970 REV3L-202 protein_coding Homo_sapiens 0 11570
ENST00000460981 REV3L-012 retained_intron Homo_sapiens 0 377
ENST00000462119 REV3L-006 processed_transcript Homo_sapiens 0 1552
ENST00000470871 REV3L-002 retained_intron Homo_sapiens 0 459
ENST00000494858 REV3L-011 retained_intron Homo_sapiens 0 416
ENST00000619481 REV3L-203 protein_coding Homo_sapiens 0 915

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