C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexing 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165032 Snx24-202 ENSMUSG00000024535 10090 + 18:53245662-53390823 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165032
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165032 3.205±1.31 3.781±0.55 10.081±0.68 4.975±1.17 2.322±1.66 5.141±0.48 2.950±0.32 4.318±0.33 3.926±0.66 5.027±0.83 5.086±0.62 3.534±1.33 6.538±2.93 0.297±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004B0 CIL_0004B0_0002 CGP 18:53176365-53390823
CIL_0004AZ CIL_0004AZ_0002 CGP 18:53245662-53418007

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261369 SNX24-001 protein_coding Homo_sapiens 0 857
ENST00000395451 SNX24-002 protein_coding Homo_sapiens 0 765
ENST00000502387 SNX24-010 processed_transcript Homo_sapiens 0 507
ENST00000503149 SNX24-009 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000506996 SNX24-004 protein_coding Homo_sapiens 0 586
ENST00000510914 SNX24-011 processed_transcript Homo_sapiens 0 392
ENST00000511211 SNX24-006 processed_transcript Homo_sapiens 0 337
ENST00000511545 SNX24-008 nonsense_mediated_decay Homo_sapiens 0 603
ENST00000513613 SNX24-007 processed_transcript Homo_sapiens 0 257
ENST00000513881 SNX24-003 protein_coding Homo_sapiens 0 588

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