C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 8 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165105 Alkbh8-202 ENSMUSG00000025899 10090 + 9:3338445-3385842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165105
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165105 0.720±0.32 0.768±0.25 0.730±0.35 0.632±0.21 0.272±0.09 0.796±0.26 0.563±0.21 0.616±0.14 0.564±0.00 1.689±0.64 1.258±0.47 0.660±0.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0016300 ISS tRNA (uracil) methyltransferase activity
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0030488 ISS tRNA methylation
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260318 ALKBH8-004 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000389568 ALKBH8-002 protein_coding Homo_sapiens 0 1659
ENST00000393100 ALKBH8-006 nonsense_mediated_decay Homo_sapiens 0 771
ENST00000417449 ALKBH8-005 protein_coding Homo_sapiens 0 1635
ENST00000428149 ALKBH8-001 protein_coding Homo_sapiens 0 1659
ENST00000452221 RP5-1092L12.2-001 processed_pseudogene Homo_sapiens 0 455

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