C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165443 Nup50-201 ENSMUSG00000016619 10090 + 15:84923428-84942955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165443 4.878±1.20 5.728±0.43 5.031±1.26 7.392±1.20 4.335±0.72 5.682±0.60 1.760±0.40 6.412±0.32 6.864±3.86 4.902±0.25 2.765±0.35 6.528±2.25 14.344±2.58 12.965±5.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V4 CIL_0000V4_0003 CGP 15:84923428-84988551

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0031965 ISS nuclear membrane
GO:0046907 IEA intracellular transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347635 NUP50-001 protein_coding Homo_sapiens 6e-27 128

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