C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prefoldin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165717 Pfdn5-008 ENSMUSG00000001289 10090 + 15:102326410-102331307 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartMuscleOvaryPlacentaTestisENSMUST00000165717
Transcript ID Bladder Brain Heart Muscle Ovary Placenta Testis
ENSMUST00000165717 161.266±0.00 313.315±0.00 59.028±0.00 48.070±5.47 440.631±33.29 218.263±70.39 523.347±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IH CIL_0001IH_0002 CGP 15:102296293-102331873
CIL_00060P CIL_00060P_0002 CGP 15:102326116-102338139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006457 IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0051082 IEA unfolded protein binding
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243040 PFDN5-003 nonsense_mediated_decay Homo_sapiens 3.00004e-41 172
ENST00000334478 PFDN5-005 protein_coding Homo_sapiens 0 481
ENST00000547228 PFDN5-007 retained_intron Homo_sapiens 9.00054e-42 174
ENST00000549759 PFDN5-013 protein_coding Homo_sapiens 0 387
ENST00000549995 PFDN5-016 retained_intron Homo_sapiens 8.00001e-42 174
ENST00000550069 PFDN5-008 retained_intron Homo_sapiens 8.00001e-42 174
ENST00000550513 PFDN5-021 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000551018 PFDN5-001 protein_coding Homo_sapiens 0 481
ENST00000551223 PFDN5-014 retained_intron Homo_sapiens 1.99993e-41 172
ENST00000552341 PFDN5-002 retained_intron Homo_sapiens 8.99998e-41 172

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