C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast cancer anti-estrogen resistance 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166232 Bcar1-201 ENSMUSG00000031955 10090 - 8:111710485-111743849 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166232 12.535±4.39 58.596±10.69 12.718±6.81 20.315±11.36 10.511±6.42 22.506±8.90 6.911±1.93 35.228±6.34 8.619±5.49 17.491±6.29 3.032±1.01 28.157±10.08 18.499±8.71 8.536±3.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001S1 CIL_0001S1_0002 CGP 8:111686510-111743849
CIL_00024P CIL_00024P_0002 CGP 8:111710485-111854310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 ISS ruffle
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 ISS focal adhesion
GO:0007015 ISS actin filament organization
GO:0007155 IEA cell adhesion
GO:0007173 ISS epidermal growth factor receptor signaling pathway
GO:0007186 IDA G-protein coupled receptor signaling pathway
GO:0007229 ISS integrin-mediated signaling pathway
GO:0008286 ISS insulin receptor signaling pathway
GO:0010595 IEA positive regulation of endothelial cell migration
GO:0015629 IDA actin cytoskeleton
GO:0016477 ISS cell migration
GO:0017124 IEA SH3 domain binding
GO:0019901 IEA protein kinase binding
GO:0030027 IDA lamellipodium
GO:0030335 ISS positive regulation of cell migration
GO:0035729 IEA cellular response to hepatocyte growth factor stimulus
GO:0048008 IDA platelet-derived growth factor receptor signaling pathway
GO:0048010 IEA vascular endothelial growth factor receptor signaling pathway
GO:0048011 ISS neurotrophin TRK receptor signaling pathway
GO:0048012 IEA hepatocyte growth factor receptor signaling pathway
GO:0050851 ISS antigen receptor-mediated signaling pathway
GO:0050853 ISS B cell receptor signaling pathway
GO:0060326 IEA cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000162330 BCAR1-002 protein_coding Homo_sapiens 0 2721
ENST00000393420 BCAR1-008 protein_coding Homo_sapiens 0 1775
ENST00000393422 BCAR1-001 protein_coding Homo_sapiens 0 2719
ENST00000418647 BCAR1-005 protein_coding Homo_sapiens 0 2726
ENST00000420641 BCAR1-003 protein_coding Homo_sapiens 0 2702
ENST00000535626 BCAR1-006 protein_coding Homo_sapiens 0 2089
ENST00000538440 BCAR1-004 protein_coding Homo_sapiens 0 2806
ENST00000542031 BCAR1-009 protein_coding Homo_sapiens 0 2702
ENST00000553953 RP11-173D3.2-001 processed_pseudogene Homo_sapiens 0 599
ENST00000557707 RP11-854K16.2-001 processed_pseudogene Homo_sapiens 0 599
ENST00000562556 BCAR1-007 nonsense_mediated_decay Homo_sapiens 0 2721
ENST00000563038 BCAR1-011 retained_intron Homo_sapiens 0 1796
ENST00000566982 BCAR1-010 processed_transcript Homo_sapiens 0 2089
ENST00000569340 BCAR1-017 protein_coding Homo_sapiens 0 309

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