C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast cancer anti-estrogen resistance 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538440 BCAR1-004 ENSG00000050820 9606 - 16:75229103-75266007 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000538440
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000538440 6.849±0.00 13.159±0.00 4.965±3.46 8.408±0.00 12.324±0.00 23.060±0.00 6.753±0.00 0.751±0.00 13.274±0.00 4.576±0.00 22.060±6.67 13.696±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001S1 CIL_0001S1_0001 CGP 16:75219000-75268053
CIL_00024P CIL_00024P_0001 CGP 16:75228187-75433485

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 TAS regulation of cell growth
GO:0001726 IDA ruffle
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0005925 IDA:ISS focal adhesion
GO:0007015 IDA actin filament organization
GO:0007155 IEA cell adhesion
GO:0007173 ISS epidermal growth factor receptor signaling pathway
GO:0007186 ISS G-protein coupled receptor signaling pathway
GO:0007229 IDA integrin-mediated signaling pathway
GO:0007596 TAS blood coagulation
GO:0008283 TAS cell proliferation
GO:0008286 ISS insulin receptor signaling pathway
GO:0010595 IDA positive regulation of endothelial cell migration
GO:0016477 IDA cell migration
GO:0017124 IEA SH3 domain binding
GO:0019901 IPI protein kinase binding
GO:0030168 TAS platelet activation
GO:0030335 IDA positive regulation of cell migration
GO:0035729 IMP cellular response to hepatocyte growth factor stimulus
GO:0042981 TAS regulation of apoptotic process
GO:0048008 ISS platelet-derived growth factor receptor signaling pathway
GO:0048010 IMP vascular endothelial growth factor receptor signaling pathway
GO:0048011 ISS neurotrophin TRK receptor signaling pathway
GO:0048012 IMP hepatocyte growth factor receptor signaling pathway
GO:0050851 IDA antigen receptor-mediated signaling pathway
GO:0050852 NAS T cell receptor signaling pathway
GO:0050853 IDA B cell receptor signaling pathway
GO:0051301 NAS cell division
GO:0060326 IMP cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166232 Bcar1-201 protein_coding Mus_musculus 0 2806

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