C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00024P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000050820-ENSG00000153774 CGP 9606 16:75228187-75433485
GeneTranscriptPositionBiotype
ENSG00000050820 (BCAR1)
breast cancer anti-estrogen resistance 1 		ENST00000162330 (BCAR1-002) 75229030-75251609 protein_coding
ENST00000393420 (BCAR1-008) 75229511-75251482 protein_coding
ENST00000393422 (BCAR1-001) 75228187-75268053 protein_coding
ENST00000418647 (BCAR1-005) 75229159-75266007 protein_coding
ENST00000420641 (BCAR1-003) 75229455-75266781 protein_coding
ENST00000535626 (BCAR1-006) 75229062-75265948 protein_coding
ENST00000538440 (BCAR1-004) 75229103-75266007 protein_coding
ENST00000542031 (BCAR1-009) 75229453-75248240 protein_coding
ENST00000546196 (BCAR1-022) 75263876-75265215 protein_coding
ENST00000561970 (BCAR1-013) 75242776-75250947 protein_coding
ENST00000562556 (BCAR1-007) 75229031-75265215 nonsense_mediated_decay
ENST00000563038 (BCAR1-011) 75229037-75236503 retained_intron
ENST00000563323 (BCAR1-012) 75242840-75266382 protein_coding
ENST00000563700 (BCAR1-014) 75243055-75250104 processed_transcript
ENST00000564028 (BCAR1-021) 75242615-75251880 protein_coding
ENST00000564170 (BCAR1-018) 75236696-75237431 retained_intron
ENST00000566465 (BCAR1-016) 75242632-75248943 protein_coding
ENST00000566982 (BCAR1-010) 75229037-75238660 processed_transcript
ENST00000567215 (BCAR1-015) 75242865-75249966 protein_coding
ENST00000568864 (BCAR1-019) 75242611-75264416 protein_coding
ENST00000569006 (BCAR1-020) 75242656-75256280 protein_coding
ENST00000569340 (BCAR1-017) 75235668-75242702 protein_coding
ENSG00000153774 (CFDP1)
craniofacial development protein 1 		ENST00000283882 (CFDP1-001) 75293710-75433485 protein_coding
ENST00000562602 (CFDP1-003) 75293908-75305438 retained_intron
ENST00000564286 (CFDP1-006) 75406572-75433470 processed_transcript
ENST00000564793 (CFDP1-010) 75293906-75363035 processed_transcript
ENST00000565646 (CFDP1-005) 75395135-75433473 processed_transcript
ENST00000566254 (CFDP1-007) 75414633-75433391 protein_coding
ENST00000566901 (CFDP1-004) 75394682-75433461 retained_intron
ENST00000569341 (CFDP1-008) 75372291-75395136 nonsense_mediated_decay
ENST00000570103 (CFDP1-002) 75293698-75306545 processed_transcript
ENST00000570279 (CFDP1-009) 75391282-75395211 processed_transcript
ENST00000612761 (CFDP1-011) 75372204-75395119 protein_coding
ENSG00000252122 (SNORA76)
Small nucleolar RNA SNORA76 		ENST00000516313 (SNORA76.1-201) 75409332-75409466 snoRNA
ENSG00000259999 (RP11-252K23.1)
 ENST00000568140 (RP11-252K23.1-001) 75321890-75325048 sense_intronic
ENSG00000261783 (RP11-252K23.2)
 ENST00000561956 (RP11-252K23.2-001) 75379818-75381260 sense_intronic
ENSG00000280152 (RP11-331F4.5)
 ENST00000624205 (RP11-331F4.5-001) 75245994-75250077 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00024P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031955-ENSMUSG00000031954 CGP 10090 8:111710485-111854310
GeneTranscriptPositionBiotype
ENSMUSG00000031954 (Cfdp1)
craniofacial development protein 1 		ENSMUST00000034432 (Cfdp1-201) 111768473-111854310 protein_coding
ENSMUSG00000031955 (Bcar1)
breast cancer anti-estrogen resistance 1 		ENSMUST00000166232 (Bcar1-201) 111710485-111743849 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024P_0001ENSG00000050820ENST00000162330ENST00000393420ENST00000393422ENST00000420641ENST00000535626ENST00000538440ENST00000542031ENST00000562556ENST00000563038ENST00000564028ENST00000566465ENSG00000153774ENST00000283882ENST00000564286ENST00000565646ENST00000566901ENST00000570103ENSG00000252122ENST00000516313ENSG00000259999ENST00000568140ENSG00000261783ENST00000561956ENSG00000280152ENST00000624205CIL_00024P_0002ENSMUSG00000031954ENSMUST00000034432ENSMUSG00000031955ENSMUST00000166232
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000050820 ENST00000162330 3.147±0.00 3.815±0.00 N/A 1.014±0.00 2.718±1.21 N/A 0.959±0.00 0.228±0.00 3.113±0.00 N/A 1.435±0.00 7.862±4.04 20.263±2.45 10.018±0.00
ENST00000393420 N/A N/A N/A 7.260±0.00 N/A 8.958±0.00 N/A 0.165±0.00 N/A 0.980±0.00 N/A 9.701±0.00 N/A 14.766±0.00
ENST00000393422 N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A N/A N/A N/A
ENST00000418647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420641 9.150±0.00 4.508±0.00 N/A 7.326±0.00 3.990±0.00 N/A N/A N/A N/A N/A N/A 13.670±0.00 11.465±0.00 N/A
ENST00000535626 N/A N/A N/A N/A N/A 0.920±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538440 6.849±0.00 13.159±0.00 N/A 4.965±3.46 8.408±0.00 12.324±0.00 N/A 23.060±0.00 6.753±0.00 0.751±0.00 13.274±0.00 4.576±0.00 22.060±6.67 13.696±0.00
ENST00000542031 N/A N/A 2.399±0.00 N/A 1.240±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562556 N/A N/A N/A N/A N/A 0.463±0.00 N/A N/A N/A N/A N/A 0.531±0.00 N/A N/A
ENST00000563038 N/A N/A 0.877±0.00 N/A N/A N/A N/A 0.199±0.00 0.777±0.00 N/A 1.052±0.00 N/A N/A N/A
ENST00000563323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564028 N/A N/A 5.105±0.00 N/A N/A N/A N/A 2.274±0.00 N/A N/A N/A N/A N/A N/A
ENST00000564170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566465 N/A N/A N/A N/A N/A 4.660±0.00 2.659±0.00 N/A 4.218±0.00 N/A 5.966±0.00 N/A N/A N/A
ENST00000566982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000153774 ENST00000283882 17.027±0.00 15.496±0.00 2.116±0.00 13.434±7.70 10.299±5.94 27.886±22.55 4.174±3.19 17.863±15.91 5.491±0.89 12.169±10.30 5.339±0.00 31.873±18.57 33.786±8.00 23.555±0.12
ENST00000562602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.677±0.00 39.228±0.00 45.046±0.00
ENST00000564793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565646 N/A N/A 3.113±0.00 N/A N/A N/A N/A 3.039±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566901 N/A N/A N/A N/A N/A N/A N/A 0.854±0.00 N/A N/A N/A N/A N/A N/A
ENST00000569341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570103 N/A N/A 3.489±0.00 N/A N/A N/A N/A 4.882±0.00 N/A 4.832±0.00 N/A 18.196±0.00 N/A N/A
ENST00000570279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252122 ENST00000516313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.227±0.00
ENSG00000259999 ENST00000568140 0.030±0.00 0.151±0.00 0.182±0.00 0.095±0.00 0.134±0.02 0.136±0.00 0.237±0.10 0.089±0.00 N/A 1.886±0.00 0.052±0.00 0.074±0.00 N/A 0.094±0.02
ENSG00000261783 ENST00000561956 0.646±0.00 1.121±0.00 N/A 0.212±0.00 0.389±0.05 1.892±0.00 0.387±0.00 2.904±1.17 0.805±0.00 0.692±0.00 0.040±0.00 0.787±0.15 0.903±0.43 0.525±0.00
ENSG00000280152 ENST00000624205 N/A N/A 0.636±0.00 N/A 1.909±0.00 0.520±0.00 0.267±0.00 0.133±0.00 0.259±0.00 0.600±0.00 N/A 0.432±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031954 ENSMUST00000034432 9.915±1.35 10.647±1.00 21.146±1.05 51.643±29.19 7.819±1.74 5.778±1.95 7.089±1.47 12.933±1.45 23.371±15.11 9.561±3.94 8.120±1.17 34.032±45.38 138.984±125.04 49.432±78.15
ENSMUSG00000031955 ENSMUST00000166232 12.535±4.39 58.596±10.69 12.718±6.81 20.315±11.36 10.511±6.42 22.506±8.90 6.911±1.93 35.228±6.34 8.619±5.49 17.491±6.29 3.032±1.01 28.157±10.08 18.499±8.71 8.536±3.14

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