C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcriptional regulator, SIN3A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167715 Sin3a-003 ENSMUSG00000042557 10090 + 9:57075338-57128366 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167715
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167715 16.682±2.94 11.142±2.56 12.973±2.59 8.310±0.00 12.006±1.22 3.257±0.11 8.763±1.06 10.671±3.14 12.480±0.00 2.163±0.31 17.023±2.25 13.435±2.01 12.823±0.58

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000776 IDA kinetochore
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001106 IGI RNA polymerase II transcription corepressor activity
GO:0001701 IMP in utero embryonic development
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0006260 IMP DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0010971 IMP positive regulation of G2/M transition of mitotic cell cycle
GO:0017053 IPI:IDA transcriptional repressor complex
GO:0034613 IMP cellular protein localization
GO:0042754 IMP negative regulation of circadian rhythm
GO:0043066 IMP negative regulation of apoptotic process
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process
GO:0051595 IDA response to methylglyoxal
GO:0071333 IDA cellular response to glucose stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360439 SIN3A-002 protein_coding Homo_sapiens 0 5221
ENST00000394947 SIN3A-001 protein_coding Homo_sapiens 0 5221
ENST00000394949 SIN3A-004 protein_coding Homo_sapiens 0 5221
ENST00000562776 SIN3A-007 protein_coding Homo_sapiens 0 612
ENST00000564778 SIN3A-005 protein_coding Homo_sapiens 0 765
ENST00000566640 SIN3A-010 retained_intron Homo_sapiens 0 610
ENST00000567289 SIN3A-003 protein_coding Homo_sapiens 0 547
ENST00000568190 SIN3A-013 protein_coding Homo_sapiens 0 446
ENST00000568309 SIN3A-015 protein_coding Homo_sapiens 0 473
ENST00000568431 SIN3A-014 protein_coding Homo_sapiens 0 558
ENST00000568919 SIN3A-012 retained_intron Homo_sapiens 0 311
ENST00000570021 SIN3A-009 retained_intron Homo_sapiens 0 459
ENST00000570115 SIN3A-006 protein_coding Homo_sapiens 0 547
ENST00000570124 SIN3A-011 retained_intron Homo_sapiens 0 307

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