C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SIN3 transcription regulator family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394949 SIN3A-004 ENSG00000169375 9606 - 15:75371130-75451585 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394949
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394949 10.410±0.00 18.156±0.00 1.275±0.00 7.661±0.00 4.556±2.25 4.811±2.47 3.280±1.69 5.113±2.50 2.165±0.46 7.339±0.00 4.083±0.00 5.729±3.19 9.018±0.00 17.615±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F8 CIL_0000F8_0002 CGP 15:75369379-75579289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000976 ISS transcription regulatory region sequence-specific DNA binding
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0002218 IMP activation of innate immune response
GO:0002230 IMP positive regulation of defense response to virus by host
GO:0005515 IPI protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006476 IMP protein deacetylation
GO:0007596 TAS blood coagulation
GO:0016580 IDA Sin3 complex
GO:0031937 IMP positive regulation of chromatin silencing
GO:0033558 IMP protein deacetylase activity
GO:0042754 ISS negative regulation of circadian rhythm
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045171 IDA intercellular bridge
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048511 IEA rhythmic process
GO:1900181 IMP negative regulation of protein localization to nucleus
GO:1901675 IMP negative regulation of histone H3-K27 acetylation
GO:2000678 IMP negative regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049169 Sin3a-201 protein_coding Mus_musculus 0 5221
ENSMUST00000168678 Sin3a-001 protein_coding Mus_musculus 0 5221
ENSMUST00000167715 Sin3a-003 protein_coding Mus_musculus 0 5221
ENSMUST00000168502 Sin3a-004 protein_coding Mus_musculus 0 5179
ENSMUST00000168177 Sin3a-002 protein_coding Mus_musculus 0 5179
ENSMUST00000165927 Sin3a-006 retained_intron Mus_musculus 0 830
ENSMUST00000167963 Sin3a-007 retained_intron Mus_musculus 0 710
ENSMUST00000169879 Sin3a-008 protein_coding Mus_musculus 0 466
ENSMUST00000163400 Sin3a-005 protein_coding Mus_musculus 0 311

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