C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168093 Prkd2-202 ENSMUSG00000041187 10090 + 7:16842902-16870461 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168093
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168093 7.695±1.84 6.143±1.25 5.246±0.19 2.127±1.14 25.327±10.76 7.740±1.54 2.120±1.04 3.327±0.65 1.719±0.49 17.896±2.51 0.788±0.34 5.624±2.06 3.797±1.76 0.443±0.22

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001938 ISS positive regulation of endothelial cell proliferation
GO:0004697 IEA protein kinase C activity
GO:0005524 IEA ATP binding
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0010595 ISS positive regulation of endothelial cell migration
GO:0030949 ISS positive regulation of vascular endothelial growth factor receptor signaling pathway
GO:0032743 IMP positive regulation of interleukin-2 production
GO:0032757 ISS positive regulation of interleukin-8 production
GO:0045743 ISS positive regulation of fibroblast growth factor receptor signaling pathway
GO:0045766 ISS positive regulation of angiogenesis
GO:0045785 ISS positive regulation of cell adhesion
GO:0046872 IEA metal ion binding
GO:0050862 IMP positive regulation of T cell receptor signaling pathway
GO:0051091 ISS positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity
GO:0070374 IDA positive regulation of ERK1 and ERK2 cascade
GO:2000573 IDA positive regulation of DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110322 PRKD1-201 protein_coding Danio_rerio 0 647
ENSDART00000153937 PRKD1-001 protein_coding Danio_rerio 0 647
ENSDART00000112765 prkd3-201 protein_coding Danio_rerio 0 553
ENSDART00000154755 prkd3-001 protein_coding Danio_rerio 0 553
ENST00000291281 PRKD2-001 protein_coding Homo_sapiens 0 3179
ENST00000433867 PRKD2-201 protein_coding Homo_sapiens 0 3179
ENST00000595132 PRKD2-013 protein_coding Homo_sapiens 0 547
ENST00000595515 PRKD2-004 protein_coding Homo_sapiens 0 2867
ENST00000597390 PRKD2-018 nonsense_mediated_decay Homo_sapiens 0 826
ENST00000597589 PRKD2-007 retained_intron Homo_sapiens 0 1690
ENST00000597641 PRKD2-012 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000598633 PRKD2-011 protein_coding Homo_sapiens 0 492
ENST00000599019 PRKD2-008 retained_intron Homo_sapiens 0 1378
ENST00000600194 PRKD2-006 protein_coding Homo_sapiens 0 2896
ENST00000601605 PRKD2-015 protein_coding Homo_sapiens 0 303
ENST00000601806 PRKD2-002 protein_coding Homo_sapiens 0 3053
ENST00000602155 PRKD2-009 retained_intron Homo_sapiens 0 1033

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