C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcriptional regulator, SIN3A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168177 Sin3a-002 ENSMUSG00000042557 10090 + 9:57076399-57128366 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSMUST00000168177
Transcript ID Brain Heart Liver Muscle
ENSMUST00000168177 3.263±0.00 3.465±0.00 5.323±0.00 1.585±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000776 IDA kinetochore
GO:0000785 IEA chromatin
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0001102 IEA RNA polymerase II activating transcription factor binding
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001106 IGI RNA polymerase II transcription corepressor activity
GO:0001701 IMP in utero embryonic development
GO:0002218 IEA activation of innate immune response
GO:0002230 IEA positive regulation of defense response to virus by host
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006260 IMP DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006476 IEA protein deacetylation
GO:0007568 IEA aging
GO:0008134 IPI transcription factor binding
GO:0010243 IEA response to organonitrogen compound
GO:0010971 IMP positive regulation of G2/M transition of mitotic cell cycle
GO:0016580 IEA Sin3 complex
GO:0017053 IPI:IDA transcriptional repressor complex
GO:0031937 IEA positive regulation of chromatin silencing
GO:0032403 IEA protein complex binding
GO:0033558 IEA protein deacetylase activity
GO:0034613 IMP cellular protein localization
GO:0042754 IMP negative regulation of circadian rhythm
GO:0043066 IMP negative regulation of apoptotic process
GO:0043234 IEA protein complex
GO:0043619 IEA regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045171 IEA intercellular bridge
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048511 IEA rhythmic process
GO:0051595 IDA response to methylglyoxal
GO:0071333 IDA cellular response to glucose stimulus
GO:1900181 IEA negative regulation of protein localization to nucleus
GO:1901675 IEA negative regulation of histone H3-K27 acetylation
GO:2000678 IEA negative regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360439 SIN3A-002 protein_coding Homo_sapiens 0 5179
ENST00000394947 SIN3A-001 protein_coding Homo_sapiens 0 5374
ENST00000394949 SIN3A-004 protein_coding Homo_sapiens 0 5179
ENST00000562776 SIN3A-007 protein_coding Homo_sapiens 0 612
ENST00000564778 SIN3A-005 protein_coding Homo_sapiens 0 765
ENST00000566640 SIN3A-010 retained_intron Homo_sapiens 0 610
ENST00000567289 SIN3A-003 protein_coding Homo_sapiens 0 743
ENST00000568190 SIN3A-013 protein_coding Homo_sapiens 0 448
ENST00000568309 SIN3A-015 protein_coding Homo_sapiens 0 473
ENST00000568431 SIN3A-014 protein_coding Homo_sapiens 0 558
ENST00000568919 SIN3A-012 retained_intron Homo_sapiens 0 375
ENST00000570021 SIN3A-009 retained_intron Homo_sapiens 0 459
ENST00000570115 SIN3A-006 protein_coding Homo_sapiens 0 547
ENST00000570124 SIN3A-011 retained_intron Homo_sapiens 0 303

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