C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor of activated T cells 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169453 Nfat5-202 ENSMUSG00000003847 10090 + 8:107293470-107379516 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000169453
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000169453 2.906±1.09 12.184±2.67 1.568±0.14 3.817±1.39 2.278±0.86 1.953±0.32 2.887±0.92 1.026±0.17 4.798±0.86 8.023±2.53 1.519±0.35 1.764±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_0004I1 CIL_0004I1_0002 CGP 8:107293470-107403206

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001816 IDA cytokine production
GO:0003677 IDA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 ISS transcription, DNA-templated
GO:0010628 IDA positive regulation of gene expression
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0070884 IDA regulation of calcineurin-NFAT signaling cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135230 chd7-001 protein_coding Danio_rerio 0.0007 53
ENSDART00000016208 chd7-201 protein_coding Danio_rerio 0.0007 53
ENST00000349945 NFAT5-201 protein_coding Homo_sapiens 0 7810
ENST00000354436 NFAT5-001 protein_coding Homo_sapiens 0 8034
ENST00000393742 NFAT5-002 protein_coding Homo_sapiens 0 7810
ENST00000426654 NFAT5-004 nonsense_mediated_decay Homo_sapiens 0 7810
ENST00000548843 AVIL-003 retained_intron Homo_sapiens 0.00003 55
ENST00000549548 AVIL-004 retained_intron Homo_sapiens 0.00003 55
ENST00000549753 AVIL-009 retained_intron Homo_sapiens 0.00001 55
ENST00000562429 NFAT5-008 retained_intron Homo_sapiens 0 361
ENST00000563474 NFAT5-011 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000565301 NFAT5-007 protein_coding Homo_sapiens 0 527
ENST00000566899 NFAT5-006 protein_coding Homo_sapiens 0 5662
ENST00000567239 NFAT5-009 protein_coding Homo_sapiens 0 6975
ENST00000567990 NFAT5-003 nonsense_mediated_decay Homo_sapiens 0 1299
ENST00000568832 NFAT5-010 retained_intron Homo_sapiens 0 496

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