C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: macrophage scavenger receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170091 Msr1-202 ENSMUSG00000025044 10090 - 8:39603452-39642678 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000170091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000170091 0.833±0.16 1.313±0.47 1.008±0.18 0.073±0.03 2.017±0.26 0.741±0.20 0.496±0.03 0.287±0.12 2.494±1.05 1.603±0.15 0.055±0.06 0.839±0.39 0.286±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000456 CIL_000456_0002 CGP 8:39005867-39642678
CIL_0001VY CIL_0001VY_0002 CGP 8:39581700-40308331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005581 IEA collagen trimer
GO:0005886 TAS plasma membrane
GO:0006898 IEA receptor-mediated endocytosis
GO:0010744 IGI positive regulation of macrophage derived foam cell differentiation
GO:0010886 IMP positive regulation of cholesterol storage
GO:0016021 IEA integral component of membrane
GO:0030169 IMP low-density lipoprotein particle binding
GO:0030301 IMP cholesterol transport
GO:0034362 IEA low-density lipoprotein particle
GO:0034381 IMP plasma lipoprotein particle clearance
GO:0042953 IMP lipoprotein transport

Homologs

No Homologs available.

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