C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000038945-ENSG00000078579 CGP 9606 8:16107878-17002181
GeneTranscriptPositionBiotype
ENSG00000038945 (MSR1)
macrophage scavenger receptor 1 		ENST00000262101 (MSR1-001) 16109431-16192715 protein_coding
ENST00000350896 (MSR1-201) 16107878-16192791 protein_coding
ENST00000355282 (MSR1-002) 16110085-16177988 protein_coding
ENST00000381998 (MSR1-003) 16139319-16192659 protein_coding
ENST00000445506 (MSR1-004) 16110046-16186272 protein_coding
ENST00000517522 (MSR1-013) 16368086-16383328 processed_transcript
ENST00000518026 (MSR1-007) 16175263-16567362 protein_coding
ENST00000518343 (MSR1-010) 16256331-16567420 processed_transcript
ENST00000518960 (MSR1-008) 16175210-16215074 protein_coding
ENST00000519060 (MSR1-005) 16140655-16192651 nonsense_mediated_decay
ENST00000520846 (MSR1-012) 16467752-16495880 processed_transcript
ENST00000521876 (MSR1-011) 16250398-16511916 processed_transcript
ENST00000522130 (MSR1-009) 16467764-16567490 processed_transcript
ENST00000522672 (MSR1-006) 16120889-16164251 protein_coding
ENSG00000078579 (FGF20)
fibroblast growth factor 20 		ENST00000180166 (FGF20-001) 16992169-17002181 protein_coding
ENST00000519941 (FGF20-002) 16992978-17001840 protein_coding
ENSG00000253184 (RP11-13N12.2)
 ENST00000521055 (RP11-13N12.2-001) 16604255-16664879 lincRNA
ENSG00000253934 (MRPL49P2)
mitochondrial ribosomal protein L49 pseudogene 2 		ENST00000521066 (MRPL49P2-001) 16374618-16375082 processed_pseudogene
ENSG00000253951 (RP11-447G11.1)
 ENST00000518788 (RP11-447G11.1-001) 16275681-16276296 processed_pseudogene
ENSG00000264092 (RN7SL474P)
RNA, 7SL, cytoplasmic 474, pseudogene 		ENST00000583485 (RN7SL474P-201) 16863196-16863496 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001VY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025044-ENSMUSG00000031603 CGP 10090 8:39581700-40308331
GeneTranscriptPositionBiotype
ENSMUSG00000025044 (Msr1)
macrophage scavenger receptor 1 		ENSMUST00000026021 (Msr1-201) 39581700-39642678 protein_coding
ENSMUST00000170091 (Msr1-202) 39603452-39642678 protein_coding
ENSMUSG00000039478 (Micu3)
mitochondrial calcium uptake family, member 3 		ENSMUST00000068999 (Micu3-001) 40307458-40384662 protein_coding
ENSMUST00000132481 (Micu3-003) 40357122-40375594 retained_intron
ENSMUST00000136835 (Micu3-002) 40354303-40386308 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VY_0001ENSG00000038945ENST00000262101ENST00000350896ENST00000355282ENST00000381998ENST00000445506ENST00000517522ENST00000518026ENST00000518343ENST00000518960ENST00000519060ENST00000520846ENST00000521876ENST00000522130ENST00000522672ENSG00000078579ENST00000180166ENST00000519941ENSG00000253184ENST00000521055ENSG00000253934ENST00000521066ENSG00000253951ENST00000518788ENSG00000264092ENST00000583485CIL_0001VY_0002ENSMUSG00000025044ENSMUST00000026021ENSMUST00000170091ENSMUSG00000039478ENSMUST00000068999ENSMUST00000132481ENSMUST00000136835
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VY_0001ENSG00000038945ENST00000262101ENST00000350896ENST00000355282ENST00000381998ENST00000445506ENST00000519060ENSG00000078579ENST00000180166ENST00000519941ENSG00000253184ENST00000521055ENSG00000253934ENST00000521066ENSG00000253951ENST00000518788ENSG00000264092ENST00000583485CIL_0001VY_0002ENSMUSG00000025044ENSMUST00000026021ENSMUST00000170091ENSMUSG00000039478ENSMUST00000068999ENSMUST00000132481ENSMUST00000136835
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000038945 ENST00000262101 N/A N/A 0.642±0.00 N/A 5.106±0.00 1.024±0.00 N/A N/A 1.456±0.00 N/A N/A N/A N/A N/A
ENST00000350896 3.197±0.00 N/A N/A 0.130±0.00 N/A N/A N/A 0.897±0.00 0.460±0.00 6.092±1.49 N/A N/A 1.698±0.00 N/A
ENST00000355282 N/A N/A 1.700±0.00 0.269±0.00 4.506±0.00 0.962±0.00 N/A 1.816±0.00 1.331±0.00 N/A N/A N/A N/A N/A
ENST00000381998 11.153±0.00 1.428±0.00 0.462±0.00 1.321±0.00 4.094±0.91 1.152±0.00 0.870±0.19 1.974±0.00 1.389±0.81 20.131±6.34 0.286±0.00 2.049±0.47 3.575±0.85 0.856±0.38
ENST00000445506 N/A N/A N/A 0.931±0.00 N/A N/A 0.639±0.00 1.379±0.00 N/A 16.802±0.00 0.367±0.00 2.119±0.00 N/A N/A
ENST00000517522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519060 9.156±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000078579 ENST00000180166 0.007±0.00 N/A N/A 0.132±0.02 0.012±0.00 0.022±0.00 N/A 0.215±0.00 N/A N/A N/A 0.099±0.04 0.028±0.00 0.057±0.02
ENST00000519941 N/A 0.106±0.00 0.154±0.00 0.483±0.34 0.493±0.00 N/A N/A 0.107±0.00 N/A 0.078±0.00 N/A 0.050±0.00 0.084±0.01 N/A
ENSG00000253184 ENST00000521055 N/A N/A 0.943±0.00 N/A 0.069±0.00 N/A N/A 0.171±0.00 1.727±0.00 0.559±0.00 N/A 0.092±0.00 N/A 0.070±0.03
ENSG00000253934 ENST00000521066 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A N/A
ENSG00000253951 ENST00000518788 N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264092 ENST00000583485 0.369±0.00 0.957±0.00 N/A 0.782±0.00 0.153±0.00 0.607±0.00 0.192±0.00 0.209±0.00 0.509±0.00 0.685±0.00 0.047±0.00 0.313±0.00 0.138±0.00 0.165±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025044 ENSMUST00000026021 0.408±0.13 0.217±0.00 0.932±0.07 0.103±0.00 N/A 0.306±0.00 0.281±0.04 0.123±0.00 1.807±0.82 N/A 0.137±0.04 0.815±0.46 0.316±0.33 3.178±0.71
ENSMUST00000170091 0.833±0.16 1.313±0.47 1.008±0.18 0.073±0.03 2.017±0.26 0.741±0.20 0.496±0.03 0.287±0.12 2.494±1.05 1.603±0.15 0.055±0.06 0.839±0.39 0.286±0.27 N/A
ENSMUSG00000039478 ENSMUST00000068999 0.663±0.07 5.969±0.91 N/A 6.406±3.84 1.785±1.28 1.410±0.21 0.141±0.01 0.937±0.52 0.440±0.06 1.415±0.78 1.199±0.00 3.540±1.29 0.589±0.36 1.976±1.33
ENSMUST00000132481 0.218±0.00 N/A N/A N/A 0.393±0.00 N/A 0.185±0.02 N/A 0.251±0.07 N/A N/A N/A 0.131±0.00 N/A
ENSMUST00000136835 N/A N/A 2.081±0.96 4.603±0.56 0.512±0.00 N/A N/A 0.553±0.00 0.236±0.03 N/A 1.165±0.33 1.278±0.00 0.440±0.34 1.373±0.00

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