C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000456_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104723-ENSG00000038945 CGP 9606 8:15417215-16567490
GeneTranscriptPositionBiotype
ENSG00000038945 (MSR1)
macrophage scavenger receptor 1 		ENST00000262101 (MSR1-001) 16109431-16192715 protein_coding
ENST00000350896 (MSR1-201) 16107878-16192791 protein_coding
ENST00000355282 (MSR1-002) 16110085-16177988 protein_coding
ENST00000381998 (MSR1-003) 16139319-16192659 protein_coding
ENST00000445506 (MSR1-004) 16110046-16186272 protein_coding
ENST00000517522 (MSR1-013) 16368086-16383328 processed_transcript
ENST00000518026 (MSR1-007) 16175263-16567362 protein_coding
ENST00000518343 (MSR1-010) 16256331-16567420 processed_transcript
ENST00000518960 (MSR1-008) 16175210-16215074 protein_coding
ENST00000519060 (MSR1-005) 16140655-16192651 nonsense_mediated_decay
ENST00000520846 (MSR1-012) 16467752-16495880 processed_transcript
ENST00000521876 (MSR1-011) 16250398-16511916 processed_transcript
ENST00000522130 (MSR1-009) 16467764-16567490 processed_transcript
ENST00000522672 (MSR1-006) 16120889-16164251 protein_coding
ENSG00000104723 (TUSC3)
tumor suppressor candidate 3 		ENST00000382020 (TUSC3-001) 15540223-15766649 protein_coding
ENST00000503191 (TUSC3-011) 15417215-15673836 processed_transcript
ENST00000503731 (TUSC3-007) 15540283-15764459 protein_coding
ENST00000506802 (TUSC3-004) 15540233-15764613 protein_coding
ENST00000507316 (TUSC3-009) 15743444-15758277 retained_intron
ENST00000507400 (TUSC3-012) 15561619-15673836 processed_transcript
ENST00000508446 (TUSC3-010) 15673763-15764418 processed_transcript
ENST00000509177 (TUSC3-013) 15623078-15651017 retained_intron
ENST00000509380 (TUSC3-006) 15540281-15733645 protein_coding
ENST00000510836 (TUSC3-005) 15540279-15764629 nonsense_mediated_decay
ENST00000511342 (TUSC3-014) 15743530-15748846 retained_intron
ENST00000511783 (TUSC3-008) 15623080-15758277 protein_coding
ENST00000515859 (TUSC3-003) 15540227-15764661 nonsense_mediated_decay
ENSG00000226836 (RP11-77B22.1)
 ENST00000492214 (RP11-77B22.1-001) 15943127-15943532 processed_pseudogene
ENSG00000248423 (RP11-235P11.1)
 ENST00000506768 (RP11-235P11.1-001) 15688914-15689562 processed_pseudogene
ENSG00000250483 (PPM1AP1)
protein phosphatase, Mg2+/Mn2+ dependent 1A, pseudogene 1 		ENST00000502740 (PPM1AP1-001) 15806149-15807283 processed_pseudogene
ENSG00000253648 (RP11-77B22.2)
 ENST00000517369 (RP11-77B22.2-001) 15973315-16000324 lincRNA
ENSG00000253934 (MRPL49P2)
mitochondrial ribosomal protein L49 pseudogene 2 		ENST00000521066 (MRPL49P2-001) 16374618-16375082 processed_pseudogene
ENSG00000253951 (RP11-447G11.1)
 ENST00000518788 (RP11-447G11.1-001) 16275681-16276296 processed_pseudogene
ENSG00000274069 (AC091559.2)
 ENST00000622673 (AC091559.2-201) 15459830-15459911 miRNA
CIL_000456_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039530-ENSMUSG00000025044 CGP 10090 8:39005867-39642678
GeneTranscriptPositionBiotype
ENSMUSG00000025044 (Msr1)
macrophage scavenger receptor 1 		ENSMUST00000026021 (Msr1-201) 39581700-39642678 protein_coding
ENSMUST00000170091 (Msr1-202) 39603452-39642678 protein_coding
ENSMUSG00000039530 (Tusc3)
tumor suppressor candidate 3 		ENSMUST00000167992 (Tusc3-201) 39005867-39165112 protein_coding
ENSMUST00000169034 (Tusc3-202) 39005908-39165112 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000456_0001ENSG00000038945ENST00000262101ENST00000350896ENST00000355282ENST00000381998ENST00000445506ENST00000519060ENSG00000104723ENST00000382020ENST00000503731ENST00000506802ENST00000507316ENST00000507400ENST00000511783ENST00000515859ENSG00000226836ENST00000492214ENSG00000248423ENST00000506768ENSG00000250483ENST00000502740ENSG00000253648ENST00000517369ENSG00000253934ENST00000521066ENSG00000253951ENST00000518788ENSG00000274069ENST00000622673CIL_000456_0002ENSMUSG00000025044ENSMUST00000026021ENSMUST00000170091ENSMUSG00000039530ENSMUST00000167992ENSMUST00000169034
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000038945 ENST00000262101 N/A N/A 0.642±0.00 N/A 5.106±0.00 1.024±0.00 N/A N/A 1.456±0.00 N/A N/A N/A N/A N/A
ENST00000350896 3.197±0.00 N/A N/A 0.130±0.00 N/A N/A N/A 0.897±0.00 0.460±0.00 6.092±1.49 N/A N/A 1.698±0.00 N/A
ENST00000355282 N/A N/A 1.700±0.00 0.269±0.00 4.506±0.00 0.962±0.00 N/A 1.816±0.00 1.331±0.00 N/A N/A N/A N/A N/A
ENST00000381998 11.153±0.00 1.428±0.00 0.462±0.00 1.321±0.00 4.094±0.91 1.152±0.00 0.870±0.19 1.974±0.00 1.389±0.81 20.131±6.34 0.286±0.00 2.049±0.47 3.575±0.85 0.856±0.38
ENST00000445506 N/A N/A N/A 0.931±0.00 N/A N/A 0.639±0.00 1.379±0.00 N/A 16.802±0.00 0.367±0.00 2.119±0.00 N/A N/A
ENST00000517522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519060 9.156±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000104723 ENST00000382020 1.219±0.00 0.453±0.00 N/A 2.057±0.62 0.629±0.33 1.256±0.00 1.019±0.22 1.331±0.00 1.074±0.00 1.270±0.03 0.063±0.00 2.365±1.23 4.445±0.00 1.367±0.00
ENST00000503191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503731 10.171±0.00 6.183±0.00 N/A 10.976±0.32 3.324±2.61 6.583±3.47 5.692±4.23 9.273±0.00 1.922±1.18 8.712±5.59 0.517±0.00 10.191±9.85 45.567±7.27 12.320±0.19
ENST00000506802 N/A N/A 1.277±0.00 N/A N/A 1.680±0.00 N/A 4.583±0.00 0.264±0.00 N/A N/A 0.389±0.00 18.019±6.45 4.513±0.00
ENST00000507316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.084±0.00 N/A N/A N/A
ENST00000507400 6.522±0.00 N/A N/A N/A 3.643±0.22 N/A 2.073±0.00 N/A N/A N/A 1.069±0.00 1.079±0.00 21.133±0.00 N/A
ENST00000508446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511783 3.790±0.00 N/A N/A 7.681±0.00 N/A N/A N/A 1.262±0.00 N/A 3.764±1.70 0.916±0.00 6.985±0.00 N/A N/A
ENST00000515859 3.546±0.00 2.208±0.00 N/A 6.853±2.69 1.143±0.42 5.575±0.00 4.213±0.00 2.505±2.13 N/A 3.865±0.00 N/A 8.547±4.81 23.266±4.29 8.116±0.00
ENSG00000226836 ENST00000492214 N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248423 ENST00000506768 N/A N/A 0.057±0.00 0.028±0.00 0.143±0.00 N/A N/A N/A 0.160±0.00 0.359±0.00 N/A N/A N/A N/A
ENSG00000250483 ENST00000502740 0.042±0.00 N/A 0.123±0.00 0.022±0.00 N/A N/A 0.020±0.00 0.054±0.00 0.150±0.00 0.030±0.00 N/A 0.023±0.00 0.030±0.01 0.069±0.00
ENSG00000253648 ENST00000517369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00
ENSG00000253934 ENST00000521066 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A N/A
ENSG00000253951 ENST00000518788 N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274069 ENST00000622673 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 0.468±0.00 25.249±0.00 N/A 0.424±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025044 ENSMUST00000026021 0.408±0.13 0.217±0.00 0.932±0.07 0.103±0.00 N/A 0.306±0.00 0.281±0.04 0.123±0.00 1.807±0.82 N/A 0.137±0.04 0.815±0.46 0.316±0.33 3.178±0.71
ENSMUST00000170091 0.833±0.16 1.313±0.47 1.008±0.18 0.073±0.03 2.017±0.26 0.741±0.20 0.496±0.03 0.287±0.12 2.494±1.05 1.603±0.15 0.055±0.06 0.839±0.39 0.286±0.27 N/A
ENSMUSG00000039530 ENSMUST00000167992 22.958±15.09 38.893±12.64 42.023±15.74 64.139±21.11 19.426±5.35 37.080±9.37 7.748±0.87 22.886±10.74 12.774±9.36 31.239±17.71 1.820±0.36 57.806±23.63 15.329±6.19 27.551±19.33
ENSMUST00000169034 N/A 23.514±6.41 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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